View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5746_high_51 (Length: 321)
Name: NF5746_high_51
Description: NF5746
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5746_high_51 |
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| [»] chr6 (1 HSPs) |
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| [»] chr1 (1 HSPs) |
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| [»] chr7 (1 HSPs) |
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| [»] chr4 (1 HSPs) |
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Alignment Details
Target: chr5 (Bit Score: 178; Significance: 5e-96; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 178; E-Value: 5e-96
Query Start/End: Original strand, 18 - 219
Target Start/End: Complemental strand, 21607600 - 21607399
Alignment:
| Q |
18 |
ttatcaacaagtccttgactcaaacggcggaatttacaagtcctctaaggtaattaacatcattagtttcatttacacgaccatacttcagaccaacact |
117 |
Q |
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| T |
21607600 |
ttatcaacaagtccttgactcaaacggctgaatttacaagcactctaaggtaattaacatcattagtttcatttacacggccatacttcagaccaacact |
21607501 |
T |
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| Q |
118 |
aactcctacttttatcatgacttaaattagagatagaggaaaaaagaagaaagagatgaaaatgtattgttttatggtgaactttacaatagaaaatgtg |
217 |
Q |
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||||||||||||| ||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
21607500 |
aactcctacttttgtcatgacttaaattagagatagaggaaaaaagaagaatgagatgaaaatgtattgttttatggtgaactttacaatagaaaatgtg |
21607401 |
T |
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| Q |
218 |
ta |
219 |
Q |
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|| |
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| T |
21607400 |
ta |
21607399 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 93; E-Value: 3e-45
Query Start/End: Original strand, 18 - 218
Target Start/End: Original strand, 21609047 - 21609246
Alignment:
| Q |
18 |
ttatcaacaagtccttgactcaaacggcggaatttacaagtcctctaaggtaattaacatcattagtttcatttacacgaccatacttcagaccaacact |
117 |
Q |
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|||||||||||||||||||| || |||||||| | | ||||||||||||||||| |||||| |||||||||||||| ||| || | ||||||||| |
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| T |
21609047 |
ttatcaacaagtccttgactagaaaagcggaattgatagatcctctaaggtaattaagatcattggtttcatttacacggttatattttaaaccaacact |
21609146 |
T |
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| Q |
118 |
aactcctacttttatcatgacttaaattagagatagaggaaaaaagaagaaagagatgaaaatgtattgttttatggtgaactttacaatagaaaatgtg |
217 |
Q |
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| T |
21609147 |
aactc-tacttttgctatgacttaaattggagatagaggaaaaaagaatgaagagatgagagtgtattgttttatggtgaactttgcaatagaaaatgtg |
21609245 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 292 - 321
Target Start/End: Complemental strand, 2565399 - 2565370
Alignment:
| Q |
292 |
ttataaaggcttaattgcacttttggaccc |
321 |
Q |
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|||||||||||||||||||||||||||||| |
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| T |
2565399 |
ttataaaggcttaattgcacttttggaccc |
2565370 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 292 - 321
Target Start/End: Original strand, 23356686 - 23356715
Alignment:
| Q |
292 |
ttataaaggcttaattgcacttttggaccc |
321 |
Q |
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|||||||||||||||||||||||||||||| |
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| T |
23356686 |
ttataaaggcttaattgcacttttggaccc |
23356715 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 29; Significance: 0.0000004; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 293 - 321
Target Start/End: Original strand, 23909889 - 23909917
Alignment:
| Q |
293 |
tataaaggcttaattgcacttttggaccc |
321 |
Q |
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||||||||||||||||||||||||||||| |
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| T |
23909889 |
tataaaggcttaattgcacttttggaccc |
23909917 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 29; Significance: 0.0000004; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 293 - 321
Target Start/End: Original strand, 12640814 - 12640842
Alignment:
| Q |
293 |
tataaaggcttaattgcacttttggaccc |
321 |
Q |
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||||||||||||||||||||||||||||| |
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| T |
12640814 |
tataaaggcttaattgcacttttggaccc |
12640842 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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