View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5746_high_58 (Length: 302)
Name: NF5746_high_58
Description: NF5746
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5746_high_58 |
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Alignment Details
Target: chr5 (Bit Score: 228; Significance: 1e-126; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 228; E-Value: 1e-126
Query Start/End: Original strand, 16 - 283
Target Start/End: Original strand, 33174646 - 33174913
Alignment:
| Q |
16 |
atatacaaaagacaaaactaaaatttttactctgcctctccaagaaatggtagtatgttcatgcctctccacaaaactagaagaaccacttatacacttt |
115 |
Q |
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|||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || |
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| T |
33174646 |
atatacaaaagacaaaactaaaatttttactctgtctctccaagaaatggtagtatgttcatgcctctccacaaaactagaagaaccacttatacatttc |
33174745 |
T |
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| Q |
116 |
tcaagatccaacacaaacacacctctacaattgattattgtcccattctttccagggttgagtattattttcatcctctccaaacaaatctactttcaac |
215 |
Q |
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||||||||||||||||||||||||||| | ||||||||| |||| ||||||| || ||||||||||||||||||||||||||||||||||||||||||| |
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| T |
33174746 |
tcaagatccaacacaaacacacctctagagttgattattctccccttctttctagaattgagtattattttcatcctctccaaacaaatctactttcaac |
33174845 |
T |
|
| Q |
216 |
atttcaagcctattgaaagtattaagtgtttaatattcatggaacatttgaaagataaacaagcctag |
283 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
33174846 |
atttcaagcctattgaaagtattaagtgtttaatattcatggaacatttgaaagataaacaagcctag |
33174913 |
T |
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