View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5746_high_68 (Length: 283)
Name: NF5746_high_68
Description: NF5746
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5746_high_68 |
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Alignment Details
Target: chr4 (Bit Score: 116; Significance: 5e-59; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 116; E-Value: 5e-59
Query Start/End: Original strand, 135 - 271
Target Start/End: Original strand, 39776143 - 39776279
Alignment:
| Q |
135 |
aatctaggtccacttcggatcaccaattatgttcagagcaccaatattgagtggttaatgcatcataggagtcgagacaaatacttaaagtttgagttta |
234 |
Q |
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| T |
39776143 |
aatctaggtccacttcggatcaccaattatgttcagagcaccaatattgagtggttaatgcatcataggagtcgagacaaatacttaaagtttgagttta |
39776242 |
T |
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| Q |
235 |
acttgggnnnnnnntggatgacttgatcattgatatt |
271 |
Q |
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| T |
39776243 |
acttgggaaaaaaatggatgacttgatcattgatatt |
39776279 |
T |
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Target: chr4; HSP #2
Raw Score: 93; E-Value: 2e-45
Query Start/End: Original strand, 18 - 110
Target Start/End: Original strand, 39775980 - 39776072
Alignment:
| Q |
18 |
ctcatccgtgaataaccaactgcatcaggagaaaggtcagtatttagcggtatcaccccctcgtgtgagctcaaatgctattctgcattgcat |
110 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
39775980 |
ctcatccgtgaataaccaactgcatcaggagaaaggtcagtatttagcggtatcaccccctcgtgtgagctcaaatgctattctgcattgcat |
39776072 |
T |
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