View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5746_high_70 (Length: 280)
Name: NF5746_high_70
Description: NF5746
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5746_high_70 |
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Alignment Details
Target: chr7 (Bit Score: 100; Significance: 2e-49; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 100; E-Value: 2e-49
Query Start/End: Original strand, 50 - 193
Target Start/End: Complemental strand, 11830972 - 11830828
Alignment:
| Q |
50 |
ttcggtttagtttgattttgtttctttagtcgagttaagatcatctctattgatgtcnnnnnnnatt-gttctatttgaagaagagtgatgataggtatg |
148 |
Q |
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| T |
11830972 |
ttcggtttagtttgattttgttcctttagtccagttaagatcatctctattgatgtttttctctatttgttctatttgaagaagagtgatgataggtatg |
11830873 |
T |
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| Q |
149 |
cacacttaggtggcaaacccccattgtacaccccttatgtggcag |
193 |
Q |
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| T |
11830872 |
cacacttaggtggcaaacccccattgtacacccctcatgtggcag |
11830828 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 201 - 263
Target Start/End: Complemental strand, 11829670 - 11829608
Alignment:
| Q |
201 |
attaatttgttaggggtaattttgtctatttacactcacttctctctctttctgcccatctct |
263 |
Q |
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| T |
11829670 |
attaatttgttaggggtaattttatctatttacactcacttctctctcttccttcccatctct |
11829608 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 66; Significance: 3e-29; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 66; E-Value: 3e-29
Query Start/End: Original strand, 130 - 260
Target Start/End: Original strand, 24680458 - 24680587
Alignment:
| Q |
130 |
aagagtgatgataggtatgcacacttaggtggcaaacccccattgtacaccccttatgtggcagnnnnnnnattaatttgttaggggtaattttgtctat |
229 |
Q |
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| T |
24680458 |
aagagtgatgacagaaatacacacttaggtggcaaacctccattatacactccttatgtggca-atttttaattaatttgttaggggtaattttgtctat |
24680556 |
T |
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| Q |
230 |
ttacactcacttctctctctttctgcccatc |
260 |
Q |
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| T |
24680557 |
ttacactcacttctctctcttccttcccatc |
24680587 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 130 - 192
Target Start/End: Original strand, 29632975 - 29633036
Alignment:
| Q |
130 |
aagagtgatgataggtatgcacacttaggtggcaaacccccattgtacaccccttatgtggca |
192 |
Q |
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| T |
29632975 |
aagagtgatgatagatatacacactaatgtggcaaa-caccattctacaccccttatgtggca |
29633036 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 150 - 192
Target Start/End: Complemental strand, 6310318 - 6310276
Alignment:
| Q |
150 |
acacttaggtggcaaacccccattgtacaccccttatgtggca |
192 |
Q |
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| T |
6310318 |
acacttagctggcaaaccccctttgtacaccccatatgtggca |
6310276 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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