View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF5746_high_72 (Length: 278)
Name: NF5746_high_72
Description: NF5746
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5746_high_72 |
 | |
|
| [»] scaffold0651 (1 HSPs) |
| | |
|
Alignment Details
Target: scaffold0651 (Bit Score: 245; Significance: 1e-136; HSPs: 1)
Name: scaffold0651
Description:
Target: scaffold0651; HSP #1
Raw Score: 245; E-Value: 1e-136
Query Start/End: Original strand, 1 - 265
Target Start/End: Original strand, 2027 - 2291
Alignment:
| Q |
1 |
aattctctgaccaccacttctgtttgttcctacttcaactgctcctgctgctattaaaattcttagtgcttgttgtataccagctctcatattctctttg |
100 |
Q |
| |
|
||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| |
|
|
| T |
2027 |
aattctctgaccaccacttctgtgtgttcctacttcaactgctcctgctgctattaaaattcttagtgcttgttgtataccggctctcatattctctttg |
2126 |
T |
|
| Q |
101 |
tcgattgaattcaatttgtagctgattcttccctctgttgttacttgtccaccagctttgtctcttattattgttatgaaatgtgcagttcttggataat |
200 |
Q |
| |
|
||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| |
|
|
| T |
2127 |
tcgattgaattcaatttgtagctgattcttcgctctgttgttacttgtccaccagctttgtctcttattattgttatgaaatgtgctgttcttggataat |
2226 |
T |
|
| Q |
201 |
ttagcattctttgtttgtagtctagtcctgattcccatggatatagtgctgaaaatgatgatggt |
265 |
Q |
| |
|
|||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
2227 |
ttagcattctttgtttgtagtccagtcctgattcccatggatatagtgctgaaaatgatgatggt |
2291 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 245; Significance: 1e-136; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 245; E-Value: 1e-136
Query Start/End: Original strand, 1 - 265
Target Start/End: Complemental strand, 31333897 - 31333633
Alignment:
| Q |
1 |
aattctctgaccaccacttctgtttgttcctacttcaactgctcctgctgctattaaaattcttagtgcttgttgtataccagctctcatattctctttg |
100 |
Q |
| |
|
||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| |
|
|
| T |
31333897 |
aattctctgaccaccacttctgtgtgttcctacttcaactgctcctgctgctattaaaattcttagtgcttgttgtataccggctctcatattctctttg |
31333798 |
T |
|
| Q |
101 |
tcgattgaattcaatttgtagctgattcttccctctgttgttacttgtccaccagctttgtctcttattattgttatgaaatgtgcagttcttggataat |
200 |
Q |
| |
|
||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| |
|
|
| T |
31333797 |
tcgattgaattcaatttgtagctgattcttcgctctgttgttacttgtccaccagctttgtctcttattattgttatgaaatgtgctgttcttggataat |
31333698 |
T |
|
| Q |
201 |
ttagcattctttgtttgtagtctagtcctgattcccatggatatagtgctgaaaatgatgatggt |
265 |
Q |
| |
|
|||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
31333697 |
ttagcattctttgtttgtagtccagtcctgattcccatggatatagtgctgaaaatgatgatggt |
31333633 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 185; E-Value: 1e-100
Query Start/End: Original strand, 1 - 265
Target Start/End: Complemental strand, 31321644 - 31321380
Alignment:
| Q |
1 |
aattctctgaccaccacttctgtttgttcctacttcaactgctcctgctgctattaaaattcttagtgcttgttgtataccagctctcatattctctttg |
100 |
Q |
| |
|
||||||||||||| ||||||||| |||||||||||||||||||||||||||||||| |||||||||| ||||||||| ||||||||||||||||||| || |
|
|
| T |
31321644 |
aattctctgaccatcacttctgtgtgttcctacttcaactgctcctgctgctattagaattcttagtccttgttgtaaaccagctctcatattctctctg |
31321545 |
T |
|
| Q |
101 |
tcgattgaattcaatttgtagctgattcttccctctgttgttacttgtccaccagctttgtctcttattattgttatgaaatgtgcagttcttggataat |
200 |
Q |
| |
|
|| |||||||||||||||||||||||||||||||||||| |||||||||||| |||||||||||||||||||| || || ||||| ||||||||||| | |
|
|
| T |
31321544 |
tcaattgaattcaatttgtagctgattcttccctctgtttttacttgtccacttgctttgtctcttattattgtgattaagtgtgctgttcttggatatt |
31321445 |
T |
|
| Q |
201 |
ttagcattctttgtttgtagtctagtcctgattcccatggatatagtgctgaaaatgatgatggt |
265 |
Q |
| |
|
||||||||||||||||| |||| |||||||||||||||||||||| || || ||||||||||||| |
|
|
| T |
31321444 |
ttagcattctttgtttgaagtcaagtcctgattcccatggatatattgatgcaaatgatgatggt |
31321380 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 41; Significance: 0.00000000000003; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 15 - 122
Target Start/End: Original strand, 22513564 - 22513672
Alignment:
| Q |
15 |
cacttctgtttgttcctacttcaactgctcctgctgctattaaaattcttagtgcttgttgtataccagctctcatattct-ctttgtcgattgaattca |
113 |
Q |
| |
|
|||||||| |||| |||||||||||| |||||||||||| | ||| || | ||||||||||| ||||||||||||||| | | | || |||||||||| |
|
|
| T |
22513564 |
cacttctgcgtgtttctacttcaactgttcctgctgctatcagaatcctcattgcttgttgtaaaccagctctcatatttttccctatcaattgaattca |
22513663 |
T |
|
| Q |
114 |
atttgtagc |
122 |
Q |
| |
|
||||||||| |
|
|
| T |
22513664 |
atttgtagc |
22513672 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University