View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5746_high_75 (Length: 270)
Name: NF5746_high_75
Description: NF5746
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5746_high_75 |
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| [»] chr1 (1 HSPs) |
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Alignment Details
Target: chr1 (Bit Score: 253; Significance: 1e-141; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 253; E-Value: 1e-141
Query Start/End: Original strand, 10 - 270
Target Start/End: Original strand, 29816931 - 29817191
Alignment:
| Q |
10 |
aaaataaacaaccaaactaacacacttcactcactcaaagcctctcaaactacaatctaatcttgtccttttgccacattaagattatcaaaagagagac |
109 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
29816931 |
aaaataaacaaccaaactaacacacttcactcactcaaagcctctcaaactacaatctaatcttgtccttttgccacattaagattatcaaaagagagac |
29817030 |
T |
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| Q |
110 |
acacacagaaagatagtcatggctagcagcagcatggcatcagccgctactggatttttgttgtcacttaatgttgctgccaacagcataacctcttcag |
209 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| ||||||||||| |
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| T |
29817031 |
acacacagaaagatagtcatggctagcagcagcatggcatcagcagctactggatttttgttgtcacttaatgttgctgccaacagcacaacctcttcag |
29817130 |
T |
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| Q |
210 |
cttcttcaaggagtaccatgttgatgttccctttaaagtccaacaatattggttcttcttc |
270 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
29817131 |
cttcttcaaggagtaccatgttgatgttccctttaaagtccaacaatattggttcttcttc |
29817191 |
T |
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