View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5746_high_85 (Length: 251)
Name: NF5746_high_85
Description: NF5746
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5746_high_85 |
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Alignment Details
Target: chr5 (Bit Score: 185; Significance: 1e-100; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 185; E-Value: 1e-100
Query Start/End: Original strand, 27 - 243
Target Start/End: Complemental strand, 19789206 - 19788990
Alignment:
| Q |
27 |
cattattcaaaatagaattaaaaagaatttttatttacaagtatatgaaacataca--gacatcacaactagctatatgggccattgcaatcatcatact |
124 |
Q |
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| T |
19789206 |
cattattcaaaatagaattaaaaagaatttttatttacaagtatatgaaacatacacagacatcacaactagccat--gggccattgcaatcatcatact |
19789109 |
T |
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| Q |
125 |
aaagcgtaaatcagatgatacaatttaatacaaatccatgaaaatcacaaacatagttgcatgcactgtgctgcatcaatatcaaagggacaatatggga |
224 |
Q |
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| T |
19789108 |
aaaacgtgaatcagatgatacaatttaatacaaatccatgaaaatcacaaacatagttgcatgcactgtgctgcatcaatatcaaagggacaatatggga |
19789009 |
T |
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| Q |
225 |
acttaaacgcttctgtgct |
243 |
Q |
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||||||||||||||||||| |
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| T |
19789008 |
acttaaacgcttctgtgct |
19788990 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 57; Significance: 7e-24; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 57; E-Value: 7e-24
Query Start/End: Original strand, 120 - 231
Target Start/End: Complemental strand, 28173504 - 28173388
Alignment:
| Q |
120 |
atactaaagcgtaaatcagatgatacaa-----tttaatacaaatccatgaaaatcacaaacatagttgcatgcactgtgctgcatcaatatcaaaggga |
214 |
Q |
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| T |
28173504 |
atactaacacgtaattcagatgatacaagaaagtttgatacaaatacaagaaaatcacaaatatagttgcttgcactgtgctgcatcaatatcaaaggga |
28173405 |
T |
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| Q |
215 |
caatatgggaacttaaa |
231 |
Q |
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| T |
28173404 |
caatacgggcacttaaa |
28173388 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 58 - 95
Target Start/End: Complemental strand, 28173581 - 28173544
Alignment:
| Q |
58 |
tatttacaagtatatgaaacatacagacatcacaacta |
95 |
Q |
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||||||||||||| | |||||||||||||||||||||| |
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| T |
28173581 |
tatttacaagtatgtaaaacatacagacatcacaacta |
28173544 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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