View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5746_high_87 (Length: 249)
Name: NF5746_high_87
Description: NF5746
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5746_high_87 |
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| [»] scaffold0150 (1 HSPs) |
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| [»] scaffold1559 (1 HSPs) |
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| [»] scaffold0118 (1 HSPs) |
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Alignment Details
Target: chr5 (Bit Score: 209; Significance: 1e-114; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 209; E-Value: 1e-114
Query Start/End: Original strand, 18 - 234
Target Start/End: Complemental strand, 19284967 - 19284752
Alignment:
| Q |
18 |
agaaagccagaaacatttgattgttgcacgtaagaatcatagagaagaggagagaaaatgagacaaaccctagctaaggagaattgaacaaaaatttgca |
117 |
Q |
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| T |
19284967 |
agaaagccagaaacatttg-ttgttgcacgtaagaatcatagagaagaggagagaaaatgagacaaaccctagctaaggagaattgaacaaaaatttgca |
19284869 |
T |
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| Q |
118 |
tttttcagagcattcgaggtaaggggataatcccatcatcttagggtatctttattccaattgtgaggttgtttaatcttgtgaatttagatgtttttat |
217 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
19284868 |
tttttcagagcattcgaggtaaggggataatcccatcatcttagggtatctttattccaattgtgaggttgtttaatcttgtgaatttagatgtttttat |
19284769 |
T |
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| Q |
218 |
aatgagaatcatggtga |
234 |
Q |
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| T |
19284768 |
aatgagaatcatggtga |
19284752 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 38; Significance: 0.000000000001; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 1 - 100
Target Start/End: Original strand, 27801476 - 27801574
Alignment:
| Q |
1 |
agtataaatagaagaatagaaagccagaaa-catttgattgttgcacgtaagaatcatagagaagaggagagaaaatgagacaaaccctagctaaggaga |
99 |
Q |
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| T |
27801476 |
agtataaatagaggaatagaaagtcagaaaacatt--attgttacatatgagaaccaaagagaagaggagaggaaaggagacaaaccctagctatggaga |
27801573 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 36; Significance: 0.00000000002; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 58 - 105
Target Start/End: Original strand, 12351309 - 12351356
Alignment:
| Q |
58 |
agagaagaggagagaaaatgagacaaaccctagctaaggagaattgaa |
105 |
Q |
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| T |
12351309 |
agagaagaggagagaaaaggaggcaaaccctaactaaggagaattgaa |
12351356 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0150 (Bit Score: 33; Significance: 0.000000001; HSPs: 1)
Name: scaffold0150
Description:
Target: scaffold0150; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 58 - 106
Target Start/End: Original strand, 13033 - 13081
Alignment:
| Q |
58 |
agagaagaggagagaaaatgagacaaaccctagctaaggagaattgaac |
106 |
Q |
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| T |
13033 |
agagaagaggagacaaaaggaggcaaaccctagttaaggagaattgaac |
13081 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 31; Significance: 0.00000002; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 42 - 100
Target Start/End: Complemental strand, 12598981 - 12598923
Alignment:
| Q |
42 |
tgcacgtaagaatcatagagaagaggagagaaaatgagacaaaccctagctaaggagaa |
100 |
Q |
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| T |
12598981 |
tgcacgttagaatcagagagaagaagagagaataggaggctaaccctagctaaggagaa |
12598923 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 38 - 106
Target Start/End: Original strand, 18321271 - 18321339
Alignment:
| Q |
38 |
ttgttgcacgtaagaatcatagagaagaggagagaaaatgagacaaaccctagctaaggagaattgaac |
106 |
Q |
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||||||||| | ||||||| || ||||||| ||| ||| ||| ||||| |||||||||||| ||||||| |
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| T |
18321271 |
ttgttgcacttgagaatcagagtgaagaggggaggaaaggaggcaaactctagctaaggagtattgaac |
18321339 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold1559 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: scaffold1559
Description:
Target: scaffold1559; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 60 - 100
Target Start/End: Original strand, 61 - 101
Alignment:
| Q |
60 |
agaagaggagagaaaatgagacaaaccctagctaaggagaa |
100 |
Q |
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| T |
61 |
agaagaggagaggaaaggaggcaaaccctagctaaggagaa |
101 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0118 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: scaffold0118
Description:
Target: scaffold0118; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 67 - 111
Target Start/End: Complemental strand, 12137 - 12093
Alignment:
| Q |
67 |
gagagaaaatgagacaaaccctagctaaggagaattgaacaaaaa |
111 |
Q |
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||||| ||| |||||||||||||||||| ||||||||||| |||| |
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| T |
12137 |
gagaggaaaggagacaaaccctagctaaagagaattgaaccaaaa |
12093 |
T |
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