View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5746_high_9 (Length: 602)
Name: NF5746_high_9
Description: NF5746
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5746_high_9 |
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Alignment Details
Target: chr1 (Bit Score: 567; Significance: 0; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 567; E-Value: 0
Query Start/End: Original strand, 1 - 583
Target Start/End: Original strand, 6701172 - 6701754
Alignment:
| Q |
1 |
aataaaaaatgcacatacctgttctggccggagaaaaacaacattccccaaaacgatgacgtttccagattcatccaatatctttgcaaactcaacacct |
100 |
Q |
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| T |
6701172 |
aataaaaaatgcacatacctgttctggccggagaaaaacaacattccccaaaacgatgacgtttccagattcatccaatatctttgcaaactcaacacct |
6701271 |
T |
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| Q |
101 |
tgttcatgattctcacacgattcaacacagatcctcaaaaactcaccgtaactaactgaattctccgaaacctctctcagtttcctcttcaacttctcca |
200 |
Q |
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| T |
6701272 |
tgttcatgattctcacacgattcaacgcagatcctcaaaaactcaccgtaactaactgaattctccgaaacctctctcagtttcctcttcaacttctcca |
6701371 |
T |
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| Q |
201 |
tttgcgatgctttcagaatcttcctcgcatcctccaccgtgaacttcgccggcgatgttgccttttccggcgccggtgcataattgagatcaaggaaacg |
300 |
Q |
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| T |
6701372 |
tttgcgatgctttcagaatcttcctcgcatcctccaccgtgaacttcgccggcgatgttgccttttccggcgccggtgcaaaattgagatcaaggaaacg |
6701471 |
T |
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| Q |
301 |
atcaccggtgttaatgcctttgagtttttccctgagtttttctccgacagggagtgagagaaactccgggaggctcaccgtgccggagtgatgcacagct |
400 |
Q |
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| T |
6701472 |
atcaccggtgttaatgcctttgagtttttccctgagtttttctccgacagggagtgagagaaactccgggaggctcaccgtgccggagtgatgcacagct |
6701571 |
T |
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| Q |
401 |
cgccggggaagaaaacggcggaaatagtttctgtttttggtttccggtgatgagagatactcacgatggaaatttgctttagaagcgtttggaggaacta |
500 |
Q |
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| T |
6701572 |
cgccggggaagaaaacggcggaaatagtttctgtttttggtttccggtgatgagagatactcacgatggaaatttgctttagaagcgtttggaggaacta |
6701671 |
T |
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| Q |
501 |
tggttcgttctaatgttgttgaggacggcgtcagagatttgacgccgtcgaaaagacgcattgtaaagagtttccgaagcgcc |
583 |
Q |
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| T |
6701672 |
tggtttgttctaatgttgttgaggacggcgtcagagatttgacgccgtcgaaaagacgctttgtaaagagtttccgaagcgcc |
6701754 |
T |
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