View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5746_high_95 (Length: 238)
Name: NF5746_high_95
Description: NF5746
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5746_high_95 |
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| [»] chr5 (1 HSPs) |
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| [»] scaffold0006 (1 HSPs) |
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| [»] scaffold0039 (1 HSPs) |
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Alignment Details
Target: chr5 (Bit Score: 181; Significance: 6e-98; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 181; E-Value: 6e-98
Query Start/End: Original strand, 18 - 238
Target Start/End: Complemental strand, 33807211 - 33806991
Alignment:
| Q |
18 |
gtaatgtgttttgtagtatttctaattttggtgaccttatgaaaatatgatgtgttcctaccaccttctaaatgccacttcagtttagatttttcttgca |
117 |
Q |
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| T |
33807211 |
gtaatgtgttttgtagtatttctaattttggcgaccttatgaaaatatgatgtgttcctaccaccttctaaatgccacttcagtttagatttttcttgcc |
33807112 |
T |
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| Q |
118 |
aaaatacttcttctttgttgagggcttcttcaaggnnnnnnnngtgctagcttctcttgttgtattttggtttctaagtagccagaggtttaaatttgtt |
217 |
Q |
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||||| ||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| |||||||| |
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| T |
33807111 |
aaaatgcttcttctttgttgagggcttcttcaaggttttttttgtgctagcttctcttgttgtattttggtttctaagtagccagaggtttgaatttgtt |
33807012 |
T |
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| Q |
218 |
gtcagatatcatgtaatttat |
238 |
Q |
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||||||||||||||||||||| |
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| T |
33807011 |
gtcagatatcatgtaatttat |
33806991 |
T |
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Target: scaffold0006 (Bit Score: 36; Significance: 0.00000000002; HSPs: 1)
Name: scaffold0006
Description:
Target: scaffold0006; HSP #1
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 33 - 152
Target Start/End: Original strand, 232561 - 232680
Alignment:
| Q |
33 |
gtatttctaattttggtgaccttatgaaaatatgatgtgttcctaccaccttctaaatgccacttcagtttagatttttcttgcaaaaatacttcttctt |
132 |
Q |
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|||||| | |||||||||| | |||||||||||| |||||||| ||| |||||||||||| |||| ||| |||||||| ||| | || | ||||||| |
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| T |
232561 |
gtattttttattttggtgatcctatgaaaatatgcagtgttcctgtcactttctaaatgccatttcactttggatttttcctgccagaagatctcttctt |
232660 |
T |
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| Q |
133 |
tgttgagggcttcttcaagg |
152 |
Q |
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| T |
232661 |
tgttaagggctaattcaagg |
232680 |
T |
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Target: scaffold0039 (Bit Score: 30; Significance: 0.00000008; HSPs: 1)
Name: scaffold0039
Description:
Target: scaffold0039; HSP #1
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 33 - 142
Target Start/End: Original strand, 42426 - 42535
Alignment:
| Q |
33 |
gtatttctaattttggtgaccttatgaaaatatgatgtgttcctaccaccttctaaatgccacttcagtttagatttttcttgcaaaaatacttcttctt |
132 |
Q |
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|||||| ||||||||||||| | || ||||||| | ||| ||| |||||| ||||||||| |||| ||| |||||||||||| | || | ||| |||| |
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| T |
42426 |
gtatttttaattttggtgactctgtggaaatatgcagcgtttctatcaccttttaaatgccatttcactttggatttttcttgccagaaaatttcctctt |
42525 |
T |
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| Q |
133 |
tgttgagggc |
142 |
Q |
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|||| ||||| |
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| T |
42526 |
tgttcagggc |
42535 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 57 - 97
Target Start/End: Original strand, 11179415 - 11179455
Alignment:
| Q |
57 |
tgaaaatatgatgtgttcctaccaccttctaaatgccactt |
97 |
Q |
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| T |
11179415 |
tgaaaatatgatgtgttcctatcaccttccacatgccactt |
11179455 |
T |
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