View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF5746_high_96 (Length: 237)

Name: NF5746_high_96
Description: NF5746
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF5746_high_96
NF5746_high_96
[»] chr4 (7 HSPs)
chr4 (116-210)||(8537512-8537607)
chr4 (17-78)||(8537645-8537706)
chr4 (143-207)||(8539622-8539686)
chr4 (17-77)||(8591495-8591555)
chr4 (159-206)||(8568368-8568416)
chr4 (17-69)||(8567663-8567714)
chr4 (17-69)||(8586406-8586457)
[»] scaffold1450 (2 HSPs)
scaffold1450 (143-207)||(1712-1776)
scaffold1450 (17-77)||(270-329)


Alignment Details
Target: chr4 (Bit Score: 80; Significance: 1e-37; HSPs: 7)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 80; E-Value: 1e-37
Query Start/End: Original strand, 116 - 210
Target Start/End: Complemental strand, 8537607 - 8537512
Alignment:
Q  116 ccattcttgg-atcaaatgagcattacctttggtttacttgttagcaatgcaaactatcattggttgcttgtgctgtgttgttatcttgttgaaca 210  Q
    |||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| | |||||||||||||||||||||||||||||    
T  8537607 ccattcttgggatcaaatgagcattacctttggtttacttgttagcaatgcaaactatcattgggttcttgtgctgtgttgttatcttgttgaaca 8537512  T

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Target: chr4; HSP #2
Raw Score: 62; E-Value: 6e-27
Query Start/End: Original strand, 17 - 78
Target Start/End: Complemental strand, 8537706 - 8537645
Alignment:
Q  17 catattaagactccataatgtttctttcgatacccaagaatctaatgcattgccttcccatg 78  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  8537706 catattaagactccataatgtttctttcgatacccaagaatctaatgcattgccttcccatg 8537645  T

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Target: chr4; HSP #3
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 143 - 207
Target Start/End: Complemental strand, 8539686 - 8539622
Alignment:
Q  143 tttggtttacttgttagcaatgcaaactatcattggttgcttgtgctgtgttgttatcttgttga 207  Q
    |||| |||||||||||||||||||||||||| ||||||||||||||||||||||| || ||||||    
T  8539686 tttgatttacttgttagcaatgcaaactatctttggttgcttgtgctgtgttgttttcatgttga 8539622  T

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Target: chr4; HSP #4
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 17 - 77
Target Start/End: Complemental strand, 8591555 - 8591495
Alignment:
Q  17 catattaagactccataatgtttctttcgatacccaagaatctaatgcattgccttcccat 77  Q
    |||||| |||| |||||||||||||||| |||| ||| |||||||||||||||| ||||||    
T  8591555 catattgagacaccataatgtttctttcaatactcaataatctaatgcattgccatcccat 8591495  T

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Target: chr4; HSP #5
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 159 - 206
Target Start/End: Complemental strand, 8568416 - 8568368
Alignment:
Q  159 gcaatgcaaactatcattggttgc-ttgtgctgtgttgttatcttgttg 206  Q
    ||||||||||||||| |||||||| ||||||||||||||| ||||||||    
T  8568416 gcaatgcaaactatctttggttgccttgtgctgtgttgttttcttgttg 8568368  T

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Target: chr4; HSP #6
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 17 - 69
Target Start/End: Complemental strand, 8567714 - 8567663
Alignment:
Q  17 catattaagactccataatgtttctttcgatacccaagaatctaatgcattgc 69  Q
    |||||| |||| |||||||||||||||| ||| | ||||||||||||||||||    
T  8567714 catattgagacaccataatgtttctttcaata-ctaagaatctaatgcattgc 8567663  T

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Target: chr4; HSP #7
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 17 - 69
Target Start/End: Complemental strand, 8586457 - 8586406
Alignment:
Q  17 catattaagactccataatgtttctttcgatacccaagaatctaatgcattgc 69  Q
    |||||| |||| |||||||||||||||| ||| | ||||||||||||||||||    
T  8586457 catattgagacaccataatgtttctttcaata-ctaagaatctaatgcattgc 8586406  T

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Target: scaffold1450 (Bit Score: 53; Significance: 2e-21; HSPs: 2)
Name: scaffold1450
Description:

Target: scaffold1450; HSP #1
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 143 - 207
Target Start/End: Complemental strand, 1776 - 1712
Alignment:
Q  143 tttggtttacttgttagcaatgcaaactatcattggttgcttgtgctgtgttgttatcttgttga 207  Q
    |||| |||||||||||||||||||||||||| ||||||||||||||||||||||| |||||||||    
T  1776 tttgatttacttgttagcaatgcaaactatctttggttgcttgtgctgtgttgttttcttgttga 1712  T

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Target: scaffold1450; HSP #2
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 17 - 77
Target Start/End: Complemental strand, 329 - 270
Alignment:
Q  17 catattaagactccataatgtttctttcgatacccaagaatctaatgcattgccttcccat 77  Q
    |||||| |||| |||||||||||||||| ||||  |||||||||||||||||||| |||||    
T  329 catattgagacaccataatgtttctttcaatact-aagaatctaatgcattgcctccccat 270  T

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