View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5746_low_10 (Length: 578)
Name: NF5746_low_10
Description: NF5746
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5746_low_10 |
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Alignment Details
Target: chr5 (Bit Score: 357; Significance: 0; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 357; E-Value: 0
Query Start/End: Original strand, 19 - 473
Target Start/End: Complemental strand, 3856147 - 3855695
Alignment:
| Q |
19 |
cttcttcccctccaaagtgatgcggctggaactttctttatgagagaatagctttatgtttcttctttttcctgttttcttgtttgtaacnnnnnnnnn- |
117 |
Q |
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| T |
3856147 |
cttcttcccctccaaagtgatgcggctggaactttctttctgagagaatagctttatgtttcttctttttcctgttttcttgtttgtaacaaaaaaaaaa |
3856048 |
T |
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| Q |
118 |
-gccgtggtttcttattttgttgaacaagtctctcctagtactggtccaactataaggaagtacaaatatctactttaggaataaaaatactatttataa |
216 |
Q |
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| T |
3856047 |
agctgtggtttcttattttgttgaacaagtctctcctagtactggtccaactataaggaagtacaaatatctactttaggaataaaacaactatttataa |
3855948 |
T |
|
| Q |
217 |
acaaatagaaaataattttacaatgtttactatcatgttaggagaaataatttaaatacacctatcaacaaattctaaattggaattgtgtagtctttca |
316 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
3855947 |
acaaatagaaaataattttacaatgtttactatcatgttaggagaaataatttaaatacacctatcaacaaattctaaattggaattgtgtagtctttca |
3855848 |
T |
|
| Q |
317 |
tcattaccccatcgcacaaagaatgatgtagaagcagatgatcacgcttgtcaaacaccaaaataaataattttatcaagtattctttgctatttccnnn |
416 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
3855847 |
acattaccccatcgcacaaagaatgatgtagaagcagatgatcacgcttgtcaaacaccaaaataaataattttatcaagtattctttgctatttccttt |
3855748 |
T |
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| Q |
417 |
nnnnaaaataaataaaagggaaataaacatttttatgtataaataaattatgaacaa |
473 |
Q |
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| T |
3855747 |
tttta----aaataaaggggaaataaacatttttatgtataaataaattatgaacaa |
3855695 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 72; E-Value: 2e-32
Query Start/End: Original strand, 503 - 578
Target Start/End: Complemental strand, 3855702 - 3855627
Alignment:
| Q |
503 |
atgaccaagacgcctataatctttatatatcaatggcgaagtcctttatctttgacagacagcctcctatcaaaac |
578 |
Q |
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|||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
3855702 |
atgaacaagacgcctataatctttatatatcaatggcgaagtcctttatctttgacagacagcctcctatcaaaac |
3855627 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 29; Significance: 0.0000008; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 27 - 71
Target Start/End: Complemental strand, 50822750 - 50822706
Alignment:
| Q |
27 |
cctccaaagtgatgcggctggaactttctttatgagagaatagct |
71 |
Q |
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| T |
50822750 |
cctccaaagtgatgcggctgaaattttctttttgagagagtagct |
50822706 |
T |
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