View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5746_low_100 (Length: 236)
Name: NF5746_low_100
Description: NF5746
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5746_low_100 |
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Alignment Details
Target: chr5 (Bit Score: 214; Significance: 1e-117; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 214; E-Value: 1e-117
Query Start/End: Original strand, 1 - 230
Target Start/End: Original strand, 3716311 - 3716540
Alignment:
| Q |
1 |
agacgaatacacaaaagcgatttcagatccaaaaactgctgctcgatggcttggtttattaaaagcagcatgtcgttcatcgcaggaaccggtttaggag |
100 |
Q |
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||||||||||||||||||||||||||||||||||| |||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
3716311 |
agacgaatacacaaaagcgatttcagatccaaaaagtgcttctcgatggcttggtttattaaaagcagcatgtcgttcatcgcaggaaccggtttaggag |
3716410 |
T |
|
| Q |
101 |
tgtacatagctcagaactacaacgtaccaaacgtgaagaagctcgcttccatggctgtttcggtcgcgagtcacctagaacaggcttataggaaacccaa |
200 |
Q |
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||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
3716411 |
tgtacatagctcagaactacaacgtaccaaacgtgaagaagcttgcttccatggctgtttcggtcgcgagtcacctagaacaggcttataggaaacccaa |
3716510 |
T |
|
| Q |
201 |
gcctgagtctaacaacaaagatgatgatgt |
230 |
Q |
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||||||||||||||||||||| |||||||| |
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| T |
3716511 |
gcctgagtctaacaacaaagacgatgatgt |
3716540 |
T |
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