View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5746_low_105 (Length: 228)
Name: NF5746_low_105
Description: NF5746
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5746_low_105 |
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| [»] chr5 (1 HSPs) |
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Alignment Details
Target: chr5 (Bit Score: 214; Significance: 1e-117; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 214; E-Value: 1e-117
Query Start/End: Original strand, 7 - 228
Target Start/End: Complemental strand, 43289736 - 43289515
Alignment:
| Q |
7 |
aaaagtagaacaagaagaatttgatctcattttggcgtataaaagaagagcttgatgaggcaagttgttgcagatgaagccgatgatgacggagttctag |
106 |
Q |
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| T |
43289736 |
aaaagtagaacaagaagaatttgatctcattttggcgtataaaagaagagcttgatgaggcaagttgttgcagatgaagccgatgatgacggagttccag |
43289637 |
T |
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| Q |
107 |
acgacggtggaaggacgaggaagagaattgagaagatgaagagcgagatgaggttgaccttcgcggcagagtttgctgagacgtgaacgaatgcttgtgc |
206 |
Q |
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| T |
43289636 |
acgacggtggaaggacgaggaagagaatcgagaagatgaagagcgagatgaggttgaccttcgcggcagagtttgctgagacgtgaacgaatgcttgtgc |
43289537 |
T |
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| Q |
207 |
tgatagctttgttccattgttt |
228 |
Q |
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| T |
43289536 |
tgatagctttgttccattgttt |
43289515 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 173; Significance: 4e-93; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 173; E-Value: 4e-93
Query Start/End: Original strand, 7 - 225
Target Start/End: Complemental strand, 52105257 - 52105042
Alignment:
| Q |
7 |
aaaagtagaacaagaagaatttgatctcattttggcgtataaaagaagagcttgatgaggcaagttgttgcagatgaagccgatgatgacggagttctag |
106 |
Q |
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|||||||||||| ||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| |||||||||||||| || |
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| T |
52105257 |
aaaagtagaaca---agaatttgatctcattttggcgtataaaagaagagcttggtgaggcaagttgttgcagatgaagccggtgatgacggagttccag |
52105161 |
T |
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| Q |
107 |
acgacggtggaaggacgaggaagagaattgagaagatgaagagcgagatgaggttgaccttcgcggcagagtttgctgagacgtgaacgaatgcttgtgc |
206 |
Q |
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|||||||||||||||||||||||||||| | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| |
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| T |
52105160 |
acgacggtggaaggacgaggaagagaatcaacaagatgaagagcgagatgaggttgaccttcgcggcagagtttgctgagacgtgaacgaatgtttgtgc |
52105061 |
T |
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| Q |
207 |
tgatagctttgttccattg |
225 |
Q |
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|||| |||||||||||||| |
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| T |
52105060 |
tgattgctttgttccattg |
52105042 |
T |
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