View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5746_low_107 (Length: 221)
Name: NF5746_low_107
Description: NF5746
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5746_low_107 |
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Alignment Details
Target: chr6 (Bit Score: 97; Significance: 8e-48; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 97; E-Value: 8e-48
Query Start/End: Original strand, 71 - 204
Target Start/End: Original strand, 21542649 - 21542782
Alignment:
| Q |
71 |
tatcacatatacaacattagactttaattagattaagtcaaaaggcaattcaatgaatagttctgccatcaagccacttatagaatgacataattagttg |
170 |
Q |
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| T |
21542649 |
tatcacatatacaacattatactttaattagattaagtcaaaaggcaattcaatgaatagttatgccatcaagccacttatagaatgacctaattagttg |
21542748 |
T |
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| Q |
171 |
acaacnnnnnnntaacatgacataattagtctct |
204 |
Q |
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| T |
21542749 |
acaacaaaaaaatagcatgacataattagtctct |
21542782 |
T |
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Target: chr5 (Bit Score: 30; Significance: 0.00000007; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 69 - 171
Target Start/End: Complemental strand, 29354177 - 29354079
Alignment:
| Q |
69 |
cgtatcacatatacaacattagactttaattagattaagtcaaaaggcaattcaatgaatagttctgccatcaagccacttatagaatgacataattagt |
168 |
Q |
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|||||||||||||||| |||||| | || ||||||||||| | || ||||||| |||| || |||||| ||| ||||||| ||||||||||| ||| |
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| T |
29354177 |
cgtatcacatatacaatattagagtata----gattaagtcaagaagctattcaataaataattatgccattaagtcacttatgaaatgacataataagt |
29354082 |
T |
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