View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5746_low_110 (Length: 216)
Name: NF5746_low_110
Description: NF5746
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5746_low_110 |
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Alignment Details
Target: chr5 (Bit Score: 102; Significance: 8e-51; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 102; E-Value: 8e-51
Query Start/End: Original strand, 82 - 202
Target Start/End: Complemental strand, 2941396 - 2941279
Alignment:
| Q |
82 |
caaaagcacaaaagcctaatttccaggtgttagagacatagtgtgtgtgtttgggtgaacataggataaaagtgattttgtatgacaaattagttgcaat |
181 |
Q |
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| T |
2941396 |
caaaagcacaaa-gcctaatttccaggtgttagagacatagtgtgtgt--ttgggtgaacataggataaaagtgattttgtatgacaaattagttgcaat |
2941300 |
T |
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| Q |
182 |
tgagtttgaagtgagataact |
202 |
Q |
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||||||||||||||||||||| |
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| T |
2941299 |
tgagtttgaagtgagataact |
2941279 |
T |
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