View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF5746_low_114 (Length: 207)
Name: NF5746_low_114
Description: NF5746
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5746_low_114 |
 | |
|
Alignment Details
Target: chr6 (Bit Score: 108; Significance: 2e-54; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 108; E-Value: 2e-54
Query Start/End: Original strand, 17 - 189
Target Start/End: Original strand, 3415746 - 3415918
Alignment:
| Q |
17 |
ataatagaccaatgaccaatacttgagttcattttgtattgatacttaaaataaaaatgcttgtgcaaagtgagtaaatttttcaaccaaaaaacnnnnn |
116 |
Q |
| |
|
||||||||||||||||||||| |||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
3415746 |
ataatagaccaatgaccaatatttgagttcattttgtattcatacttaaaataaaaatgcttgtgcaaagtgagtaaatttttcaaccaaaaaacttttt |
3415845 |
T |
|
| Q |
117 |
nnnnnnnnnnnnnnccctacatgtacattaataatgcaagtaggtatatgcaattaaatatggtgttcatatg |
189 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
3415846 |
tcttttctctttttccctacatgtacattaataatgcaagtaggtatatgcaattaaatatggtgttcatatg |
3415918 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University