View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF5746_low_115 (Length: 207)

Name: NF5746_low_115
Description: NF5746
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF5746_low_115
NF5746_low_115
[»] chr4 (4 HSPs)
chr4 (45-198)||(38753362-38753515)
chr4 (7-44)||(9799360-9799397)
chr4 (7-44)||(52012915-52012952)
chr4 (1-45)||(46720247-46720291)
[»] chr5 (7 HSPs)
chr5 (3-44)||(13421007-13421048)
chr5 (1-44)||(29990093-29990136)
chr5 (1-44)||(38010611-38010654)
chr5 (1-42)||(42331069-42331110)
chr5 (11-44)||(4408372-4408405)
chr5 (1-46)||(13015512-13015557)
chr5 (7-44)||(13478042-13478079)
[»] chr3 (4 HSPs)
chr3 (1-45)||(34029287-34029331)
chr3 (1-44)||(47186306-47186349)
chr3 (7-44)||(42664810-42664847)
chr3 (1-39)||(31187072-31187110)
[»] chr1 (2 HSPs)
chr1 (1-42)||(8809639-8809680)
chr1 (1-44)||(35998383-35998426)
[»] chr6 (2 HSPs)
chr6 (1-46)||(34245698-34245743)
chr6 (2-42)||(17330515-17330555)
[»] chr2 (3 HSPs)
chr2 (1-43)||(3668008-3668050)
chr2 (14-44)||(9207278-9207308)
chr2 (1-29)||(10163613-10163641)


Alignment Details
Target: chr4 (Bit Score: 150; Significance: 2e-79; HSPs: 4)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 150; E-Value: 2e-79
Query Start/End: Original strand, 45 - 198
Target Start/End: Complemental strand, 38753515 - 38753362
Alignment:
Q  45 cagcctttaaatggagaagaatttattttatttcctaagatagctatatgatacaactctatggggttattgcatatacttgattaatcctttatagaaa 144  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||    
T  38753515 cagcctttaaatggagaagaatttattttatttcctaagatagctatatgatacaactctatggagttattgcatatacttgattaatcctttatagaaa 38753416  T
Q  145 ttttcatcacatatataaaacattggacaaatcattattcatatgcaaaccata 198  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  38753415 ttttcatcacatatataaaacattggacaaatcattattcatatgcaaaccata 38753362  T

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Target: chr4; HSP #2
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 7 - 44
Target Start/End: Complemental strand, 9799397 - 9799360
Alignment:
Q  7 ctaatgttatataacataatggtacacaagtgctatcc 44  Q
    ||||||||||||||||||||||||||||||||||||||    
T  9799397 ctaatgttatataacataatggtacacaagtgctatcc 9799360  T

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Target: chr4; HSP #3
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 7 - 44
Target Start/End: Original strand, 52012915 - 52012952
Alignment:
Q  7 ctaatgttatataacataatggtacacaagtgctatcc 44  Q
    ||||||||||||||||||||||||||||||||||||||    
T  52012915 ctaatgttatataacataatggtacacaagtgctatcc 52012952  T

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Target: chr4; HSP #4
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 1 - 45
Target Start/End: Original strand, 46720247 - 46720291
Alignment:
Q  1 aattgactaatgttatataacataatggtacacaagtgctatccc 45  Q
    |||||||||||||||||||||||||||||| | ||||||||||||    
T  46720247 aattgactaatgttatataacataatggtaaagaagtgctatccc 46720291  T

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Target: chr5 (Bit Score: 42; Significance: 0.000000000000005; HSPs: 7)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 42; E-Value: 0.000000000000005
Query Start/End: Original strand, 3 - 44
Target Start/End: Complemental strand, 13421048 - 13421007
Alignment:
Q  3 ttgactaatgttatataacataatggtacacaagtgctatcc 44  Q
    ||||||||||||||||||||||||||||||||||||||||||    
T  13421048 ttgactaatgttatataacataatggtacacaagtgctatcc 13421007  T

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Target: chr5; HSP #2
Raw Score: 40; E-Value: 0.00000000000007
Query Start/End: Original strand, 1 - 44
Target Start/End: Original strand, 29990093 - 29990136
Alignment:
Q  1 aattgactaatgttatataacataatggtacacaagtgctatcc 44  Q
    ||||| ||||||||||||||||||||||||||||||||||||||    
T  29990093 aattggctaatgttatataacataatggtacacaagtgctatcc 29990136  T

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Target: chr5; HSP #3
Raw Score: 40; E-Value: 0.00000000000007
Query Start/End: Original strand, 1 - 44
Target Start/End: Complemental strand, 38010654 - 38010611
Alignment:
Q  1 aattgactaatgttatataacataatggtacacaagtgctatcc 44  Q
    ||||| ||||||||||||||||||||||||||||||||||||||    
T  38010654 aattggctaatgttatataacataatggtacacaagtgctatcc 38010611  T

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Target: chr5; HSP #4
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 1 - 42
Target Start/End: Complemental strand, 42331110 - 42331069
Alignment:
Q  1 aattgactaatgttatataacataatggtacacaagtgctat 42  Q
    ||||| ||||||||||||||||||||||||||||||||||||    
T  42331110 aattggctaatgttatataacataatggtacacaagtgctat 42331069  T

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Target: chr5; HSP #5
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 11 - 44
Target Start/End: Complemental strand, 4408405 - 4408372
Alignment:
Q  11 tgttatataacataatggtacacaagtgctatcc 44  Q
    |||||||||||||||||| |||||||||||||||    
T  4408405 tgttatataacataatggcacacaagtgctatcc 4408372  T

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Target: chr5; HSP #6
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 1 - 46
Target Start/End: Original strand, 13015512 - 13015557
Alignment:
Q  1 aattgactaatgttatataacataatggtacacaagtgctatccca 46  Q
    ||||| ||||||||||||||||||||| ||| |||||| |||||||    
T  13015512 aattggctaatgttatataacataatgatacgcaagtggtatccca 13015557  T

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Target: chr5; HSP #7
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 7 - 44
Target Start/End: Complemental strand, 13478079 - 13478042
Alignment:
Q  7 ctaatgttatataacataatggtacacaagtgctatcc 44  Q
    |||||||||||||||||||| ||||||| |||||||||    
T  13478079 ctaatgttatataacataatcgtacacatgtgctatcc 13478042  T

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Target: chr3 (Bit Score: 41; Significance: 0.00000000000002; HSPs: 4)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 1 - 45
Target Start/End: Complemental strand, 34029331 - 34029287
Alignment:
Q  1 aattgactaatgttatataacataatggtacacaagtgctatccc 45  Q
    ||||| |||||||||||||||||||||||||||||||||||||||    
T  34029331 aattggctaatgttatataacataatggtacacaagtgctatccc 34029287  T

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Target: chr3; HSP #2
Raw Score: 40; E-Value: 0.00000000000007
Query Start/End: Original strand, 1 - 44
Target Start/End: Original strand, 47186306 - 47186349
Alignment:
Q  1 aattgactaatgttatataacataatggtacacaagtgctatcc 44  Q
    ||||| ||||||||||||||||||||||||||||||||||||||    
T  47186306 aattggctaatgttatataacataatggtacacaagtgctatcc 47186349  T

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Target: chr3; HSP #3
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 7 - 44
Target Start/End: Original strand, 42664810 - 42664847
Alignment:
Q  7 ctaatgttatataacataatggtacacaagtgctatcc 44  Q
    ||||||||||||||||||||||||||||||||||||||    
T  42664810 ctaatgttatataacataatggtacacaagtgctatcc 42664847  T

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Target: chr3; HSP #4
Raw Score: 35; E-Value: 0.00000000007
Query Start/End: Original strand, 1 - 39
Target Start/End: Complemental strand, 31187110 - 31187072
Alignment:
Q  1 aattgactaatgttatataacataatggtacacaagtgc 39  Q
    ||||| |||||||||||||||||||||||||||||||||    
T  31187110 aattggctaatgttatataacataatggtacacaagtgc 31187072  T

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Target: chr1 (Bit Score: 38; Significance: 0.000000000001; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 1 - 42
Target Start/End: Complemental strand, 8809680 - 8809639
Alignment:
Q  1 aattgactaatgttatataacataatggtacacaagtgctat 42  Q
    ||||| ||||||||||||||||||||||||||||||||||||    
T  8809680 aattggctaatgttatataacataatggtacacaagtgctat 8809639  T

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Target: chr1; HSP #2
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 1 - 44
Target Start/End: Original strand, 35998383 - 35998426
Alignment:
Q  1 aattgactaatgttatataacataatggtacacaagtgctatcc 44  Q
    ||||| |||||||||||||||||||||||||||| |||||||||    
T  35998383 aattggctaatgttatataacataatggtacacaggtgctatcc 35998426  T

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Target: chr6 (Bit Score: 34; Significance: 0.0000000003; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 1 - 46
Target Start/End: Original strand, 34245698 - 34245743
Alignment:
Q  1 aattgactaatgttatataacataatggtacacaagtgctatccca 46  Q
    ||||| |||||||||||||| ||||||||||||||||| |||||||    
T  34245698 aattggctaatgttatataatataatggtacacaagtgttatccca 34245743  T

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Target: chr6; HSP #2
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 2 - 42
Target Start/End: Complemental strand, 17330555 - 17330515
Alignment:
Q  2 attgactaatgttatataacataatggtacacaagtgctat 42  Q
    |||| ||||| ||||||||||||||||||||||||||||||    
T  17330555 attggctaatattatataacataatggtacacaagtgctat 17330515  T

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Target: chr2 (Bit Score: 31; Significance: 0.00000002; HSPs: 3)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 1 - 43
Target Start/End: Complemental strand, 3668050 - 3668008
Alignment:
Q  1 aattgactaatgttatataacataatggtacacaagtgctatc 43  Q
    ||||| ||||| |||||||| ||||||||||||||||||||||    
T  3668050 aattggctaatattatataatataatggtacacaagtgctatc 3668008  T

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Target: chr2; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 14 - 44
Target Start/End: Original strand, 9207278 - 9207308
Alignment:
Q  14 tatataacataatggtacacaagtgctatcc 44  Q
    |||||||||||||||||||||||||||||||    
T  9207278 tatataacataatggtacacaagtgctatcc 9207308  T

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Target: chr2; HSP #3
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 1 - 29
Target Start/End: Original strand, 10163613 - 10163641
Alignment:
Q  1 aattgactaatgttatataacataatggt 29  Q
    |||||||||||||||||||||||||||||    
T  10163613 aattgactaatgttatataacataatggt 10163641  T

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