View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5746_low_116 (Length: 205)
Name: NF5746_low_116
Description: NF5746
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5746_low_116 |
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Alignment Details
Target: chr4 (Bit Score: 156; Significance: 4e-83; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 156; E-Value: 4e-83
Query Start/End: Original strand, 16 - 195
Target Start/End: Complemental strand, 31585432 - 31585258
Alignment:
| Q |
16 |
actcattgaatggataattattttatacacgtctagatagttccacttggtattttatttatagcacacatgcctacgtgcctagtggatgtttgcctac |
115 |
Q |
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| T |
31585432 |
actcattgaatggataattattttatacacgtctagatagttccacttggtattttatttatagcacacatgcctacgtgcctagtggatgtttgcctac |
31585333 |
T |
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| Q |
116 |
tacattatattatattatatttaacacaagagagggggattaaatagttgaaaaacagtttgtgtttttggtggtgatga |
195 |
Q |
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|||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |
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| T |
31585332 |
tacattatatta-----tatttaacacaagagagggggattaaatagttgaaaaacagtttgtgtttttggtggtaatga |
31585258 |
T |
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