View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5746_low_118 (Length: 203)
Name: NF5746_low_118
Description: NF5746
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5746_low_118 |
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Alignment Details
Target: chr1 (Bit Score: 93; Significance: 2e-45; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 93; E-Value: 2e-45
Query Start/End: Original strand, 95 - 191
Target Start/End: Complemental strand, 31086353 - 31086257
Alignment:
| Q |
95 |
attatttatatcctgagacgagatgaggtttctgagccatttatcaatctctttaagaagttttacaagccaataatacaccataaaacattaaaca |
191 |
Q |
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| T |
31086353 |
attatttatatcctgagacgagatgaggtttctgagtcatttatcaatctctttaagaagttttacaagccaataatacaccataaaacattaaaca |
31086257 |
T |
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Target: chr1; HSP #2
Raw Score: 76; E-Value: 2e-35
Query Start/End: Original strand, 1 - 103
Target Start/End: Complemental strand, 31086485 - 31086389
Alignment:
| Q |
1 |
gttagatatacttgacctatatccatgacccatggggaataataaatcctccccgggagaataaactttatggcaagcaaataaccaactttctattatt |
100 |
Q |
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| T |
31086485 |
gttagatatacttgacctatatccatgacccatggggaataataaatcttccccggg------aactttatggcaagcaaataaccaactttctattatt |
31086392 |
T |
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