View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF5746_low_12 (Length: 538)

Name: NF5746_low_12
Description: NF5746
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF5746_low_12
NF5746_low_12
[»] chr8 (13 HSPs)
chr8 (213-425)||(28722970-28723183)
chr8 (213-425)||(28730612-28730825)
chr8 (73-218)||(28707875-28708029)
chr8 (233-353)||(28707222-28707348)
chr8 (145-218)||(28723315-28723388)
chr8 (145-218)||(28730957-28731030)
chr8 (484-528)||(28723242-28723286)
chr8 (484-528)||(28730884-28730928)
chr8 (145-218)||(28623715-28623788)
chr8 (145-218)||(28736575-28736648)
chr8 (145-218)||(28628056-28628129)
chr8 (368-424)||(28707773-28707830)
chr8 (213-241)||(28703844-28703872)
[»] scaffold0591 (1 HSPs)
scaffold0591 (145-218)||(8498-8571)


Alignment Details
Target: chr8 (Bit Score: 198; Significance: 1e-107; HSPs: 13)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 198; E-Value: 1e-107
Query Start/End: Original strand, 213 - 425
Target Start/End: Original strand, 28722970 - 28723183
Alignment:
Q  213 taaatcataatcaagtatcataatgaaaatatgaaaaaacttgcaagcaatatctctattcatgaatcttaacaacttgtaaggagagagaacttcaata 312  Q
    |||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  28722970 taaatcataatcaagtatcataatgaaaatttgaaaaaacttgcaagcaatatctctattcatgaatcttaacaacttgtaaggagagagaacttcaata 28723069  T
Q  313 catatgtaatttaaatattttattttttcagtatataaatgcacatgaatattattgtagtaagcaaacaagt-accctattcgaaagaacttcgatccc 411  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| |||||||||||||||||||    
T  28723070 catatgtaatttaaatattttattttttcagtatataaatgcacatgaatattattgtagtaagcaaacaagtaaccctagtcgaaagaacttcgatccc 28723169  T
Q  412 atacagcaacacta 425  Q
    ||||||||||||||    
T  28723170 atacagcaacacta 28723183  T

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Target: chr8; HSP #2
Raw Score: 198; E-Value: 1e-107
Query Start/End: Original strand, 213 - 425
Target Start/End: Original strand, 28730612 - 28730825
Alignment:
Q  213 taaatcataatcaagtatcataatgaaaatatgaaaaaacttgcaagcaatatctctattcatgaatcttaacaacttgtaaggagagagaacttcaata 312  Q
    |||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  28730612 taaatcataatcaagtatcataatgaaaatttgaaaaaacttgcaagcaatatctctattcatgaatcttaacaacttgtaaggagagagaacttcaata 28730711  T
Q  313 catatgtaatttaaatattttattttttcagtatataaatgcacatgaatattattgtagtaagcaaacaagt-accctattcgaaagaacttcgatccc 411  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| |||||||||||||||||||    
T  28730712 catatgtaatttaaatattttattttttcagtatataaatgcacatgaatattattgtagtaagcaaacaagtaaccctagtcgaaagaacttcgatccc 28730811  T
Q  412 atacagcaacacta 425  Q
    ||||||||||||||    
T  28730812 atacagcaacacta 28730825  T

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Target: chr8; HSP #3
Raw Score: 107; E-Value: 2e-53
Query Start/End: Original strand, 73 - 218
Target Start/End: Original strand, 28707875 - 28708029
Alignment:
Q  73 aaaatagaaaggagtacaaatagtactaaacccaagtttagttggtaataaatccacccaa---------agaacactagtacatgttctttacttaaag 163  Q
    |||||||||||||||||||||||||||| ||||||||||||||||||||| ||||||||||         ||||||||||||||||||| ||||||||||    
T  28707875 aaaatagaaaggagtacaaatagtactatacccaagtttagttggtaatagatccacccaaagacaccaaagaacactagtacatgttcattacttaaag 28707974  T
Q  164 aactccataacccagaaattacacacacgacattcatatctgatgccactaaatc 218  Q
    ||||||||||||||||||||||| |||||||||||||||||||||||||||||||    
T  28707975 aactccataacccagaaattacagacacgacattcatatctgatgccactaaatc 28708029  T

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Target: chr8; HSP #4
Raw Score: 59; E-Value: 9e-25
Query Start/End: Original strand, 233 - 353
Target Start/End: Original strand, 28707222 - 28707348
Alignment:
Q  233 taatgaaaatatgaaaaaacttgcaagcaatatctctattcatgaatcttaacaacttgtaagg--agagagaacttcaatacatatgtaatttaaatat 330  Q
    ||||||||||||  ||||| ||||||||||||| |||| |||||||||||||||||||||||    | |||||||||| |||||||||||||||||||||    
T  28707222 taatgaaaatatctaaaaatttgcaagcaatatatctagtcatgaatcttaacaacttgtaacactatagagaacttcgatacatatgtaatttaaatat 28707321  T
Q  331 tttatttt----ttcagtatataaatg 353  Q
    ||| ||||    |||||||||||||||    
T  28707322 ttttttttttttttcagtatataaatg 28707348  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 58; E-Value: 4e-24
Query Start/End: Original strand, 145 - 218
Target Start/End: Original strand, 28723315 - 28723388
Alignment:
Q  145 acatgttctttacttaaagaactccataacccagaaattacacacacgacattcatatctgatgccactaaatc 218  Q
    ||||| ||||||||||||||||||||||||||| |||||||| |||| ||||||||||||||||||||||||||    
T  28723315 acatgctctttacttaaagaactccataacccaaaaattacagacacaacattcatatctgatgccactaaatc 28723388  T

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Target: chr8; HSP #6
Raw Score: 58; E-Value: 4e-24
Query Start/End: Original strand, 145 - 218
Target Start/End: Original strand, 28730957 - 28731030
Alignment:
Q  145 acatgttctttacttaaagaactccataacccagaaattacacacacgacattcatatctgatgccactaaatc 218  Q
    ||||| ||||||||||||||||||||||||||| |||||||| |||| ||||||||||||||||||||||||||    
T  28730957 acatgctctttacttaaagaactccataacccaaaaattacagacacaacattcatatctgatgccactaaatc 28731030  T

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Target: chr8; HSP #7
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 484 - 528
Target Start/End: Original strand, 28723242 - 28723286
Alignment:
Q  484 cgagtacaagtagtactaaactcaagtcataggagagagaataat 528  Q
    |||||||||||||||||||||||||||||||||||||||||||||    
T  28723242 cgagtacaagtagtactaaactcaagtcataggagagagaataat 28723286  T

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Target: chr8; HSP #8
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 484 - 528
Target Start/End: Original strand, 28730884 - 28730928
Alignment:
Q  484 cgagtacaagtagtactaaactcaagtcataggagagagaataat 528  Q
    |||||||||||||||||||||||||||||||||||||||||||||    
T  28730884 cgagtacaagtagtactaaactcaagtcataggagagagaataat 28730928  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 145 - 218
Target Start/End: Original strand, 28623715 - 28623788
Alignment:
Q  145 acatgttctttacttaaagaactccataacccagaaattacacacacgacattcatatctgatgccactaaatc 218  Q
    ||||| ||||||||||||||||||||||||||| || ||||  |||| |||||||||||| ||||| |||||||    
T  28623715 acatgctctttacttaaagaactccataacccataagttacgaacacaacattcatatcttatgcctctaaatc 28623788  T

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Target: chr8; HSP #10
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 145 - 218
Target Start/End: Original strand, 28736575 - 28736648
Alignment:
Q  145 acatgttctttacttaaagaactccataacccagaaattacacacacgacattcatatctgatgccactaaatc 218  Q
    ||||||||||||||||||||||||||||||  |||| ||||| ||||  ||| ||||| |||||||||||||||    
T  28736575 acatgttctttacttaaagaactccataacgtagaagttacagacacagcatacatatttgatgccactaaatc 28736648  T

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Target: chr8; HSP #11
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 145 - 218
Target Start/End: Original strand, 28628056 - 28628129
Alignment:
Q  145 acatgttctttacttaaagaactccataacccagaaattacacacacgacattcatatctgatgccactaaatc 218  Q
    ||||| |||| |||||||||||||||||||||| || ||||  ||||  |||||| |||| ||||| |||||||    
T  28628056 acatgctcttcacttaaagaactccataacccaaaagttacgaacacagcattcacatcttatgcctctaaatc 28628129  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 368 - 424
Target Start/End: Original strand, 28707773 - 28707830
Alignment:
Q  368 tgtagtaagcaaacaagta-ccctattcgaaagaacttcgatcccatacagcaacact 424  Q
    |||| |||||||||||||| ||| ||| |||||||||||||||||||| |||| ||||    
T  28707773 tgtaataagcaaacaagtaacccaatttgaaagaacttcgatcccatatagcagcact 28707830  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 213 - 241
Target Start/End: Original strand, 28703844 - 28703872
Alignment:
Q  213 taaatcataatcaagtatcataatgaaaa 241  Q
    |||||||||||||||||||||||||||||    
T  28703844 taaatcataatcaagtatcataatgaaaa 28703872  T

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Target: scaffold0591 (Bit Score: 34; Significance: 0.0000000008; HSPs: 1)
Name: scaffold0591
Description:

Target: scaffold0591; HSP #1
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 145 - 218
Target Start/End: Complemental strand, 8571 - 8498
Alignment:
Q  145 acatgttctttacttaaagaactccataacccagaaattacacacacgacattcatatctgatgccactaaatc 218  Q
    ||||| |||| |||||||||||||||||||||| || ||||  |||| ||||||| |||| |||||| ||||||    
T  8571 acatgctcttcacttaaagaactccataacccaaaagttacgaacacaacattcacatcttatgccaataaatc 8498  T

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