View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5746_low_14 (Length: 532)
Name: NF5746_low_14
Description: NF5746
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5746_low_14 |
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Alignment Details
Target: chr4 (Bit Score: 355; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 355; E-Value: 0
Query Start/End: Original strand, 1 - 522
Target Start/End: Complemental strand, 31585760 - 31585258
Alignment:
| Q |
1 |
cattaatacaagaattttttaaaaacactagcttaatgagataaatgtttagatatgttaggttccgaaaaaacactaggatcatcatagtcgatctcaa |
100 |
Q |
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||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| |||||||||||| |
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| T |
31585760 |
cattaatacaacaattttttaaaaacactagcttaatgagataaatgtttagatatgttaggttccgaaaactcactaggatcat---agtcgatctcaa |
31585664 |
T |
|
| Q |
101 |
gtagccgaacccgaactcatctaatccagttaatagcaacnnnnnnntattcaggtattttatagaaaatatttccgacacattcgatcatatattttga |
200 |
Q |
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|||||||||| ||||||||||||||||||||||||||||| |||||||||||||||| ||||| ||||||||||||||| |||||||||||||| |
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| T |
31585663 |
gtagccgaactcgaactcatctaatccagttaatagcaacaaaaaaatattcaggtattttatggaaaacatttccgacacattcaatcatatattttga |
31585564 |
T |
|
| Q |
201 |
aatagtgcatcaacaaattacatattaacttataaaatcgatataattttttattttgtaccattacaatagttgtaacatnnnnnnnnnnnnnnnnnnn |
300 |
Q |
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|||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
31585563 |
aatagtgcatcaacaaattatatattaacttataaaatcgatataattttttattttgtaccattacaatagttgtaacat---------aaaaaaaaat |
31585473 |
T |
|
| Q |
301 |
ngctgtaacataatagtgcagtaattatatatactttacagaactcattgaatggataattattttatacacgtctagatagttccacttggtattttat |
400 |
Q |
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|||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
31585472 |
agctgtaacataatagtgcagtaat--tatatactttacagaactcattgaatggataattattttatacacgtctagatagttccacttggtattttat |
31585375 |
T |
|
| Q |
401 |
ttatagcacacatgcctacgtgcctagtggatgtttgcctactacattatattatattatatttaacacaagagagggggattaaatagttgaaaaacag |
500 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
31585374 |
ttatagcacacatgcctacgtgcctagtggatgtttgcctactac-----attatattatatttaacacaagagagggggattaaatagttgaaaaacag |
31585280 |
T |
|
| Q |
501 |
tttgtgtttttggtggtgatga |
522 |
Q |
| |
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||||||||||||||||| |||| |
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| T |
31585279 |
tttgtgtttttggtggtaatga |
31585258 |
T |
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