View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5746_low_15 (Length: 515)
Name: NF5746_low_15
Description: NF5746
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5746_low_15 |
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| [»] chr8 (1 HSPs) |
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Alignment Details
Target: chr8 (Bit Score: 431; Significance: 0; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 431; E-Value: 0
Query Start/End: Original strand, 1 - 515
Target Start/End: Original strand, 37503357 - 37503875
Alignment:
| Q |
1 |
atgtattacatgttatgttttagaattttgctccactgtaatttaacaatgggactaaaacaagtcactaataaagaaagcagatatacacatcgtggta |
100 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| |
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| T |
37503357 |
atgtattacatgttatgttttagaattttgctccactgtaatttaacaatgggactaaaacaagtcactaataaagaaagcagatatatacatcgtggta |
37503456 |
T |
|
| Q |
101 |
agctcatcttgtaatgtaaaacagaggaaacagggtacaaataccaaatttactcaaacttttatatgtaaactatgttgccatatttctgt-----tga |
195 |
Q |
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||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| |||||||||||||||| ||| |
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| T |
37503457 |
agctcatcttgtaatgtaaaacagaggaaacagggtagaaataccaaatttactcaaacttttatatgtaaactgtgttgccatatttctgcgctgctga |
37503556 |
T |
|
| Q |
196 |
atattatatatgcacaaagcaaccatatggaaagtctttaactgaaagatggactagtaatttgtaaatagaagacatgcnnnnnnngtagagcaatacc |
295 |
Q |
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|||||||||||||||||||||| ||||||||||||||| |||||||||||||||||||| |||||||||||||||||||| ||||| ||||||| |
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| T |
37503557 |
atattatatatgcacaaagcaagcatatggaaagtcttaaactgaaagatggactagta-tttgtaaatagaagacatgcaaaaaaagtagaacaatacc |
37503655 |
T |
|
| Q |
296 |
cattccttaataatcctttaatcagcaccattgattgatctttaaacttgacagatcatgaaatgtatattattgaagtagaagatgattccatggaaaa |
395 |
Q |
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|||||||||||||||||| ||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
37503656 |
cattccttaataatccttgaatcagcaccattcattgatctttaaacttgacagatcatgaaatgtatattattgaagtagaagatgattccatggaaaa |
37503755 |
T |
|
| Q |
396 |
tttcctcttcacaggttgtatttcttcttccatttattttgctaacaaattaagcaatattatttttatttggtctttcactagatgatacaccagaatc |
495 |
Q |
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|||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
37503756 |
tttcctcttcacaggttgtatttcctcttccatttattttgctaacaaattaagcaatattatttttatttggtctttcactagatgatacaccagaatc |
37503855 |
T |
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| Q |
496 |
accatcatcattatctactc |
515 |
Q |
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|||||||||||||||||||| |
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| T |
37503856 |
accatcatcattatctactc |
37503875 |
T |
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