View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5746_low_16 (Length: 496)
Name: NF5746_low_16
Description: NF5746
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5746_low_16 |
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Alignment Details
Target: chr1 (Bit Score: 162; Significance: 3e-86; HSPs: 7)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 162; E-Value: 3e-86
Query Start/End: Original strand, 156 - 324
Target Start/End: Complemental strand, 4877702 - 4877533
Alignment:
| Q |
156 |
aaagcatgtaatctaatagacctctagcaatcaa-tccgcgaacaaacaagttccgatccttatttccatagcttatggagagagcgtgcaaagttgctc |
254 |
Q |
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| T |
4877702 |
aaagcatgtaatctaatagacctctagcaatcaaatccgcgaacaaacaagttccgatccttatttccatagcttatggagagagcgtgcaaagttgctc |
4877603 |
T |
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| Q |
255 |
agcaagttatggtatgagagccaccgctgtcttttggtaacttcgatgcttcaccaaacaagccaacttt |
324 |
Q |
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| T |
4877602 |
agcaagttatggtatgagagccaccgctgtcttttggtaacttcgatgcttcaccaaacaagccaacttt |
4877533 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 147; E-Value: 3e-77
Query Start/End: Original strand, 318 - 496
Target Start/End: Complemental strand, 4872958 - 4872780
Alignment:
| Q |
318 |
caactttaaatagttcaagagtaaatgtaatagggttgtccaatggaaagtttgttaagtagcaaagtttccatgatttttgcaatcttactaactcttt |
417 |
Q |
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|||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| |
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| T |
4872958 |
caactttaaatagttcaagagtaaatgtaatatggttgtccaatggaaagtttgttaaatagcaaagtttccatgatttttgcaatcttactaactcttt |
4872859 |
T |
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| Q |
418 |
gacctttgtagagttcatcaatgatttaataataactagcaactttaggttttactatcacagcaactacagttttagc |
496 |
Q |
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| T |
4872858 |
gacctttgtatagttcatcaatgattgaatgatacctagcaacgttaggttttaccatcacagcaactacagttttagc |
4872780 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 109; E-Value: 1e-54
Query Start/End: Original strand, 11 - 119
Target Start/End: Complemental strand, 4877798 - 4877690
Alignment:
| Q |
11 |
cataggcataatcaaaagcttaatcaaaaagcataaaagaagaaacataggtatctgttaatttgaaggacatatttgccttatttaacaaactagaaag |
110 |
Q |
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| T |
4877798 |
cataggcataatcaaaagcttaatcaaaaagcataaaagaagaaacataggtatctgttaatttgaaggacatatttgccttatttaacaaactagaaag |
4877699 |
T |
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| Q |
111 |
catgtaatc |
119 |
Q |
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||||||||| |
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| T |
4877698 |
catgtaatc |
4877690 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 132 - 182
Target Start/End: Original strand, 670434 - 670484
Alignment:
| Q |
132 |
atagttctttaattagcaaaccaaaaagcatgtaatctaatagacctctag |
182 |
Q |
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| T |
670434 |
atagttctttaattagaaaactggaaagcatgtaatctaatagacctctag |
670484 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #5
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 12 - 64
Target Start/End: Original strand, 2288345 - 2288395
Alignment:
| Q |
12 |
ataggcataatcaaaagcttaatcaaaaagcataaaagaagaaacataggtat |
64 |
Q |
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| T |
2288345 |
ataggcataatcaa--gcttaatcaaaaagcataaatcaagaaacataggtat |
2288395 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #6
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 126 - 171
Target Start/End: Complemental strand, 28326916 - 28326870
Alignment:
| Q |
126 |
aaaagcatagttctttaattagcaaac-caaaaagcatgtaatctaa |
171 |
Q |
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| T |
28326916 |
aaaagcatagtcctttaattagcaaactaaaaaagcatgtaatctaa |
28326870 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #7
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 282 - 332
Target Start/End: Complemental strand, 47569592 - 47569542
Alignment:
| Q |
282 |
tgtcttttggtaacttcgatgcttcaccaaacaagccaactttaaatagtt |
332 |
Q |
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| T |
47569592 |
tgtctttggataacgtcaatgcttcaccaaacaagcccactttaaatagtt |
47569542 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 40; Significance: 0.0000000000002; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 126 - 204
Target Start/End: Original strand, 47923009 - 47923090
Alignment:
| Q |
126 |
aaaagcatagttctttaattagcaaaccaaaaagcatgtaatc---taatagacctctagcaatcaatccgcgaacaaacaa |
204 |
Q |
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|||| ||||||||||| ||||||||||||| |||||| ||||| ||||||||||||||||||||| || ||||| ||||| |
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| T |
47923009 |
aaaatcatagttctttgattagcaaaccaataagcatataatctgataatagacctctagcaatcaacccacgaacgaacaa |
47923090 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 29; Significance: 0.0000007; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 126 - 162
Target Start/End: Complemental strand, 9066898 - 9066862
Alignment:
| Q |
126 |
aaaagcatagttctttaattagcaaaccaaaaagcat |
162 |
Q |
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| T |
9066898 |
aaaagcatagtccttcaattagcaaaccaaaaagcat |
9066862 |
T |
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