View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5746_low_17 (Length: 474)
Name: NF5746_low_17
Description: NF5746
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5746_low_17 |
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| [»] chr4 (1 HSPs) |
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Alignment Details
Target: chr4 (Bit Score: 399; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 399; E-Value: 0
Query Start/End: Original strand, 11 - 474
Target Start/End: Original strand, 48630916 - 48631378
Alignment:
| Q |
11 |
cacagacatttgtcacgttatgttgaccaaataagtaaattgacggaaggggcaaactgatagacgtttaacaattttgaagataattttgnnnnnnnct |
110 |
Q |
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| T |
48630916 |
cacagacatttgtcacgtcatgttgaccaaatgagtaaattgacggaaggggcaaactgatagacgtttaacaattttggagataattttgtttttttct |
48631015 |
T |
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| Q |
111 |
ctaatttgaaagtggtattcgcaagaatttacaacttttgaaggtttttgactatttactcattggatgatattactaccgtgcatatttgagtactctc |
210 |
Q |
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| T |
48631016 |
ctaatttgaaagtggtattcgcaagaatttacaacttttgaaggtttttgactatttactcattggatgatattactactgtgcatatttgagtactgtc |
48631115 |
T |
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| Q |
211 |
tgttcaaagaacccgttactttgtttaaaaactactatagaaagacagcacttgaaaatctagaataaatgtacatttcctttaacaaaaaatttcatcc |
310 |
Q |
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| T |
48631116 |
tctttaaagaacccgttactttgtttaaaaactactatagaaagacagcacttgaaaatctagaataaatgtacatttcctttaacaaaaaatttcatcc |
48631215 |
T |
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| Q |
311 |
ttttgatttgagatatcaattttataatttggccagacggctaataagttaagtaaaacattaacatactctaaaaaatgtgtctcttatcttttaaaaa |
410 |
Q |
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| T |
48631216 |
ttttgatttgagatatcatttttataatttggccagacggctaataagttaagt-aaacattaacatactctaaaaaatgtgtctcttatcttttaaaaa |
48631314 |
T |
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| Q |
411 |
atataacatgacttgagaactgagatttccttctgaagtggacattgagacactaatcaaacga |
474 |
Q |
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| T |
48631315 |
atataacatgactagagaactgagatttccttctgaagtggacattgagacactaatcaaacga |
48631378 |
T |
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