View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF5746_low_18 (Length: 469)

Name: NF5746_low_18
Description: NF5746
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF5746_low_18
NF5746_low_18
[»] chr4 (20 HSPs)
chr4 (1-199)||(8537288-8537486)
chr4 (242-460)||(8536638-8536855)
chr4 (98-187)||(8595758-8595847)
chr4 (107-187)||(8584535-8584615)
chr4 (98-157)||(8613237-8613296)
chr4 (323-460)||(19906640-19906775)
chr4 (327-440)||(33462928-33463039)
chr4 (242-323)||(8582564-8582644)
chr4 (399-450)||(43477663-43477713)
chr4 (390-460)||(8029969-8030038)
chr4 (342-440)||(39216680-39216778)
chr4 (350-440)||(47575057-47575146)
chr4 (399-440)||(13521642-13521683)
chr4 (389-450)||(48276284-48276344)
chr4 (57-96)||(8539465-8539504)
chr4 (98-164)||(8645375-8645439)
chr4 (362-436)||(34560823-34560896)
chr4 (362-440)||(41817180-41817256)
chr4 (389-450)||(12874939-12875000)
chr4 (197-241)||(8536880-8536924)
[»] scaffold0011 (1 HSPs)
scaffold0011 (327-447)||(145992-146112)
[»] chr8 (8 HSPs)
chr8 (331-439)||(17953542-17953650)
chr8 (329-440)||(15875261-15875372)
chr8 (350-450)||(40125482-40125581)
chr8 (399-440)||(43302342-43302383)
chr8 (362-450)||(25367607-25367694)
chr8 (362-450)||(37772092-37772179)
chr8 (350-439)||(17026348-17026436)
chr8 (350-439)||(17556840-17556928)
[»] chr7 (7 HSPs)
chr7 (337-459)||(16372798-16372920)
chr7 (337-437)||(4579921-4580021)
chr7 (399-440)||(8076445-8076486)
chr7 (399-440)||(9650617-9650658)
chr7 (399-440)||(23866468-23866509)
chr7 (362-450)||(27256623-27256710)
chr7 (412-440)||(9008556-9008584)
[»] chr2 (11 HSPs)
chr2 (349-450)||(19094079-19094179)
chr2 (337-440)||(42926215-42926317)
chr2 (364-450)||(10160345-10160429)
chr2 (399-440)||(30658574-30658615)
chr2 (364-440)||(30643519-30643594)
chr2 (389-460)||(29678157-29678227)
chr2 (350-440)||(30651337-30651426)
chr2 (362-436)||(6297513-6297586)
chr2 (367-439)||(13291135-13291207)
chr2 (399-440)||(35602322-35602363)
chr2 (363-435)||(7737461-7737532)
[»] chr3 (5 HSPs)
chr3 (342-450)||(35456539-35456646)
chr3 (362-450)||(45904166-45904252)
chr3 (399-440)||(49019801-49019842)
chr3 (362-450)||(10585810-10585897)
chr3 (400-440)||(28125525-28125565)
[»] scaffold0045 (1 HSPs)
scaffold0045 (328-450)||(83440-83560)
[»] chr1 (7 HSPs)
chr1 (327-440)||(7882404-7882516)
chr1 (350-460)||(16833874-16833983)
chr1 (389-460)||(23192453-23192523)
chr1 (362-450)||(41097579-41097666)
chr1 (362-440)||(33055440-33055517)
chr1 (399-440)||(40233021-40233062)
chr1 (412-440)||(17214110-17214138)
[»] chr6 (6 HSPs)
chr6 (399-440)||(15991307-15991348)
chr6 (364-440)||(24588803-24588878)
chr6 (344-450)||(17913998-17914103)
chr6 (360-440)||(6112399-6112478)
chr6 (389-460)||(14509374-14509442)
chr6 (337-397)||(22610008-22610068)
[»] scaffold0002 (1 HSPs)
scaffold0002 (350-450)||(4473-4572)
[»] scaffold1450 (1 HSPs)
scaffold1450 (57-96)||(1548-1587)
[»] chr5 (4 HSPs)
chr5 (350-440)||(39518818-39518907)
chr5 (350-440)||(39523457-39523546)
chr5 (399-440)||(12044793-12044834)
chr5 (355-450)||(31731924-31732018)
[»] scaffold0628 (1 HSPs)
scaffold0628 (365-436)||(6790-6859)
[»] scaffold0020 (1 HSPs)
scaffold0020 (362-449)||(861-947)
[»] scaffold0060 (1 HSPs)
scaffold0060 (355-436)||(47586-47666)


Alignment Details
Target: chr4 (Bit Score: 191; Significance: 1e-103; HSPs: 20)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 191; E-Value: 1e-103
Query Start/End: Original strand, 1 - 199
Target Start/End: Complemental strand, 8537486 - 8537288
Alignment:
Q  1 gaatggcaaaggatttactttgatgaagatttaaatttgatttagctcttacaattacttgaaagagctagaacttgacattattgattatttgcaatac 100  Q
    |||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  8537486 gaatggcaaaggatttcctttgatgaagatttaaatttgatttagctcttacaattacttgaaagagctagaacttgacattattgattatttgcaatac 8537387  T
Q  101 aagccttgtgaatcttctgaaaaggtgttcattatatctatatatactgtgaataatgaaggaaaagaatttacatttttatgtaaattgcatttcctg 199  Q
    |||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  8537386 aagccttgtgaatcttctgaaaaggtgttcattatatctatatatattgtgaataatgaaggaaaagaatttacatttttatgtaaattgcatttcctg 8537288  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 167; E-Value: 3e-89
Query Start/End: Original strand, 242 - 460
Target Start/End: Complemental strand, 8536855 - 8536638
Alignment:
Q  242 ttgcttcctattcctttggtttatttgaacatattgctatgactattgaaagttgtatatatgcacaatttttcatgtttgagatcatagtccctttttt 341  Q
    ||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| ||||||||||||||||||||||||| |||||| |||||||     
T  8536855 ttgcttcctattcctttggtttatttgaacagattgctatgactattgaaagttgtatgtatgcacaatttttcatgtttgagaccatagtaccttttt- 8536757  T
Q  342 ggtataacgtcccttcagatataagaatggttttaagagcgtaatctcttcgatatttttatgtcctttaagaataaataatattttaagatcatagtct 441  Q
    ||||||| |||| ||||||  ||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||     
T  8536756 ggtataatgtccattcagaattaagaatggttttaagagcataatctcttcgatatttttatgtcctttaagaataaataatattttaagatcatagtcc 8536657  T
Q  442 cattttcgggatgatgtcc 460  Q
    ||||||||| |||||||||    
T  8536656 cattttcggtatgatgtcc 8536638  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 98 - 187
Target Start/End: Complemental strand, 8595847 - 8595758
Alignment:
Q  98 tacaagccttgtgaatcttctgaaaaggtgttcattatatctatatatactgtgaataatgaaggaaaagaatttacatttttatgtaaa 187  Q
    |||||| |||||||||||||||||||| |||||||||| |||||||||||||||| |||| |||||||||||||| |||||| |||||||    
T  8595847 tacaaggcttgtgaatcttctgaaaagctgttcattatgtctatatatactgtgagtaatcaaggaaaagaatttgcattttaatgtaaa 8595758  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 49; E-Value: 8e-19
Query Start/End: Original strand, 107 - 187
Target Start/End: Complemental strand, 8584615 - 8584535
Alignment:
Q  107 tgtgaatcttctgaaaaggtgttcattatatctatatatactgtgaataatgaaggaaaagaatttacatttttatgtaaa 187  Q
    ||||||||||  ||| || | |||||||| ||||||||||||||||||||| |||||||||||||| ||||||||||||||    
T  8584615 tgtgaatcttacgaatagctcttcattatgtctatatatactgtgaataatcaaggaaaagaatttgcatttttatgtaaa 8584535  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 44; E-Value: 7e-16
Query Start/End: Original strand, 98 - 157
Target Start/End: Original strand, 8613237 - 8613296
Alignment:
Q  98 tacaagccttgtgaatcttctgaaaaggtgttcattatatctatatatactgtgaataat 157  Q
    |||||| |||||||||||||||||||| |||||||||| |||||||||||||| ||||||    
T  8613237 tacaaggcttgtgaatcttctgaaaagctgttcattatgtctatatatactgtaaataat 8613296  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 323 - 460
Target Start/End: Complemental strand, 19906775 - 19906640
Alignment:
Q  323 agatcatagtcccttttttggtataacgtcccttcagatataagaatggttttaagagcgtaatctcttcgatatttttatgtcctttaagaataaataa 422  Q
    |||||||||||||||||| ||| ||| || ||||| ||  ||||||||   |||||  | || || |||||||||||||| ||||||| | |||||||||    
T  19906775 agatcatagtcccttttt-ggtttaatgttccttcggaattaagaatgaccttaagttcatagtcccttcgatatttttaagtcctttga-aataaataa 19906678  T
Q  423 tattttaagatcatagtctcattttcgggatgatgtcc 460  Q
    |||||||||||||||||| | ||||||| || ||||||    
T  19906677 tattttaagatcatagtccctttttcggtataatgtcc 19906640  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 327 - 440
Target Start/End: Original strand, 33462928 - 33463039
Alignment:
Q  327 catagtcccttttttggtataacgtcccttcagatataagaatggttttaagagcgtaatctcttcgatatttttatgtcctttaagaataaataatatt 426  Q
    |||||||||||||  ||| ||| |||||||||||  ||||||| || |||||  | ||||| |||||||||||||||||||||  | ||||||||||| |    
T  33462928 catagtcccttttc-ggtttaatgtcccttcagaattaagaatagtcttaagttcataatcccttcgatatttttatgtccttcga-aataaataataat 33463025  T
Q  427 ttaagatcatagtc 440  Q
    ||||||||||||||    
T  33463026 ttaagatcatagtc 33463039  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 242 - 323
Target Start/End: Complemental strand, 8582644 - 8582564
Alignment:
Q  242 ttgcttcctattcctttggtttatttgaacata-ttgctatgactattgaaagttgtatatatgcacaatttttcatgtttga 323  Q
    |||||||| |||| ||||||||||||||||| | |||| |||||||||||||| ||  ||||||| |||||| ||||||||||    
T  8582644 ttgcttccaattcttttggtttatttgaacagatttgcgatgactattgaaagctg--tatatgcgcaatttgtcatgtttga 8582564  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 399 - 450
Target Start/End: Original strand, 43477663 - 43477713
Alignment:
Q  399 tttatgtcctttaagaataaataatattttaagatcatagtctcattttcgg 450  Q
    ||||||||| || ||||||||||||||||||||||||||||| |||||||||    
T  43477663 tttatgtccatttagaataaataatattttaagatcatagtc-cattttcgg 43477713  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 390 - 460
Target Start/End: Original strand, 8029969 - 8030038
Alignment:
Q  390 ttcgatatttttatgtcctttaagaataaataatattttaagatcatagtctcattttcgggatgatgtcc 460  Q
    ||||||||||||||||||||   |||||||||||| ||||||||||| ||||| ||||||| || ||||||    
T  8029969 ttcgatatttttatgtccttcg-gaataaataataatttaagatcattgtctctttttcggtataatgtcc 8030038  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 342 - 440
Target Start/End: Original strand, 39216680 - 39216778
Alignment:
Q  342 ggtataacgtcccttcagatataagaatggttttaagagcgtaatctcttcgatatttttatgtcctttaagaataaataatattttaagatcatagtc 440  Q
    ||||||| ||||||||  |  |||||| ||| || ||||| || || |||| |||||||||||||| ||  |||||||||||||||||| |||||||||    
T  39216680 ggtataatgtcccttcgaaattaagaaaggtcttgagagcatagtcccttcaatatttttatgtccctttggaataaataatattttaaaatcatagtc 39216778  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 350 - 440
Target Start/End: Complemental strand, 47575146 - 47575057
Alignment:
Q  350 gtcccttcagatataagaatggttttaagagcgtaatctcttcgatatttttatgtcctttaagaataaataatattttaagatcatagtc 440  Q
    |||||||||||   ||||||||| |||||||| || || |||| || | |||||||| ||| |||||||| ||||||||||||||||||||    
T  47575146 gtcccttcagaatcaagaatggtcttaagagcatagtcccttcaat-tatttatgtcattttagaataaagaatattttaagatcatagtc 47575057  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 399 - 440
Target Start/End: Original strand, 13521642 - 13521683
Alignment:
Q  399 tttatgtcctttaagaataaataatattttaagatcatagtc 440  Q
    |||||||| ||| |||||||||||||||||||||||||||||    
T  13521642 tttatgtctttttagaataaataatattttaagatcatagtc 13521683  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 389 - 450
Target Start/End: Original strand, 48276284 - 48276344
Alignment:
Q  389 cttcgatatttttatgtcctttaagaataaataatattttaagatcatagtctcattttcgg 450  Q
    |||||||||||||||||||||   |||||||||||| ||||||||||||||| | |||||||    
T  48276284 cttcgatatttttatgtccttcg-gaataaataataatttaagatcatagtccctttttcgg 48276344  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 57 - 96
Target Start/End: Complemental strand, 8539504 - 8539465
Alignment:
Q  57 acttgaaagagctagaacttgacattattgattatttgca 96  Q
    |||||||||||||||||||| ||||| |||||||||||||    
T  8539504 acttgaaagagctagaacttcacattgttgattatttgca 8539465  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 98 - 164
Target Start/End: Complemental strand, 8645439 - 8645375
Alignment:
Q  98 tacaagccttgtgaatcttctgaaaaggtgttcattatatctatatatactgtgaataatgaaggaa 164  Q
    |||||| ||||||||||||||| |||| |||||||  | |||||||||||||| |||||| ||||||    
T  8645439 tacaaggcttgtgaatcttctgcaaagctgttcat--tgtctatatatactgtaaataatcaaggaa 8645375  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 362 - 436
Target Start/End: Complemental strand, 34560896 - 34560823
Alignment:
Q  362 ataagaatggttttaagagcgtaatctcttcgatatttttatgtcctttaagaataaataatattttaagatcat 436  Q
    ||||||||||| |||||||| || || |||| || | ||||||||  || |||||||||||||||||||||||||    
T  34560896 ataagaatggtcttaagagcatagtcccttcaat-tatttatgtctctttagaataaataatattttaagatcat 34560823  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 362 - 440
Target Start/End: Complemental strand, 41817256 - 41817180
Alignment:
Q  362 ataagaatggttttaagagcgtaatctcttcgatatttttatgtcctttaagaataaataatattttaagatcatagtc 440  Q
    ||||||||||| |||||||| || || |||| || | ||||||||  || |||||||||||||||||||||||||||||    
T  41817256 ataagaatggtcttaagagcatagtc-cttcaat-tgtttatgtctctttagaataaataatattttaagatcatagtc 41817180  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #19
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 389 - 450
Target Start/End: Complemental strand, 12875000 - 12874939
Alignment:
Q  389 cttcgatatttttatgtcctttaagaataaataatattttaagatcatagtctcattttcgg 450  Q
    ||||||||||||| ||||| ||   |||||||||||||||||||||||| || | |||||||    
T  12875000 cttcgatatttttgtgtcccttcgaaataaataatattttaagatcataatccctttttcgg 12874939  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #20
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 197 - 241
Target Start/End: Complemental strand, 8536924 - 8536880
Alignment:
Q  197 ctgtgtgtgaatacattttgctttctctgttggaatcaaggaaat 241  Q
    |||||||||| ||| |||| || ||||||||||||||||||||||    
T  8536924 ctgtgtgtgagtacgtttttctctctctgttggaatcaaggaaat 8536880  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0011 (Bit Score: 73; Significance: 4e-33; HSPs: 1)
Name: scaffold0011
Description:

Target: scaffold0011; HSP #1
Raw Score: 73; E-Value: 4e-33
Query Start/End: Original strand, 327 - 447
Target Start/End: Original strand, 145992 - 146112
Alignment:
Q  327 catagtcccttttttggtataacgtcccttcagatataagaatggttttaagagcgtaatctcttcgatatttttatgtcctttaagaataaataatatt 426  Q
    |||||||||||||| ||||||| |||| |||| | |||||||||||||||||||| || || |||||||||||||||||||||| |||||| ||||||||    
T  145992 catagtccctttttcggtataatgtccattcaaaaataagaatggttttaagagcatagtcccttcgatatttttatgtcctttcagaatatataatatt 146091  T
Q  427 ttaagatcatagtctcatttt 447  Q
    |||||||||||| ||| ||||    
T  146092 ttaagatcatagcctcttttt 146112  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 61; Significance: 5e-26; HSPs: 8)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 61; E-Value: 5e-26
Query Start/End: Original strand, 331 - 439
Target Start/End: Original strand, 17953542 - 17953650
Alignment:
Q  331 gtcccttttttggtataacgtcccttcagatataagaatggttttaagagcgtaatctcttcgatatttttatgtcctttaagaataaataatattttaa 430  Q
    |||||||||| ||||||| ||||||||  |  |||||||||| |||||||| || || ||||||||||||||||||| ||||||||||||||||||||||    
T  17953542 gtccctttttcggtataatgtcccttccaaattaagaatggtcttaagagcatagtcccttcgatatttttatgtcccttaagaataaataatattttaa 17953641  T
Q  431 gatcatagt 439  Q
     ||||||||    
T  17953642 catcatagt 17953650  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 329 - 440
Target Start/End: Original strand, 15875261 - 15875372
Alignment:
Q  329 tagtcccttttttggtataacgtcccttcagatataagaatggttttaagagcgtaatctcttcgatatttttatgtcctttaagaataaataatatttt 428  Q
    |||||| ||||| |||||||  ||||||| ||  ||| |||||| |||||||  || || ||| ||||||||||||||| || |||||||||||||||||    
T  15875261 tagtccttttttcggtataatctcccttcggaattaaaaatggtattaagagtatagtccctttgatatttttatgtcccttcagaataaataatatttt 15875360  T
Q  429 aagatcatagtc 440  Q
    ||||||||||||    
T  15875361 aagatcatagtc 15875372  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 350 - 450
Target Start/End: Original strand, 40125482 - 40125581
Alignment:
Q  350 gtcccttcagatataagaatggttttaagagcgtaatctcttcgatatttttatgtcctttaagaataaataatattttaagatcatagtctcattttcg 449  Q
    |||||||| ||  |||||||||| |||||  | || || |||||||||||||||||||||  | ||||||||||| ||||||||||||||| | ||||||    
T  40125482 gtcccttcggaattaagaatggtcttaagttcatagtcccttcgatatttttatgtccttcga-aataaataataatttaagatcatagtccctttttcg 40125580  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 399 - 440
Target Start/End: Original strand, 43302342 - 43302383
Alignment:
Q  399 tttatgtcctttaagaataaataatattttaagatcatagtc 440  Q
    |||||||||||| |||||||| ||||||||||||||||||||    
T  43302342 tttatgtccttttagaataaagaatattttaagatcatagtc 43302383  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 362 - 450
Target Start/End: Original strand, 25367607 - 25367694
Alignment:
Q  362 ataagaatggttttaagagcgtaatctcttcgatatttttatgtcctttaagaataaataatattttaagatcatagtctcattttcgg 450  Q
    ||||||||||| |||||||| || || |||| || | ||||||||  || ||||||||||||||||||||||||| ||| | |||||||    
T  25367607 ataagaatggtcttaagagcatagtcccttc-atttatttatgtctctttagaataaataatattttaagatcatggtccctttttcgg 25367694  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 362 - 450
Target Start/End: Complemental strand, 37772179 - 37772092
Alignment:
Q  362 ataagaatggttttaagagcgtaatctcttcgatatttttatgtcctttaagaataaataatattttaagatcatagtctcattttcgg 450  Q
    ||||||||||| |||||||| || || |||| || | ||||||||  || ||||||||||||||||||||||||| ||| | |||||||    
T  37772179 ataagaatggtcttaagagcatagtcccttcaat-tatttatgtctctttagaataaataatattttaagatcatggtccctttttcgg 37772092  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 350 - 439
Target Start/End: Complemental strand, 17026436 - 17026348
Alignment:
Q  350 gtcccttcagatataagaatggttttaagagcgtaatctcttcgatatttttatgtcctttaagaataaataatattttaagatcatagt 439  Q
    |||||||| ||  |||||||||| |||||  | || || ||||||||| |||||||||||   |||||||||||| ||||||||||||||    
T  17026436 gtcccttcggaattaagaatggtcttaagttcatagtcccttcgatatgtttatgtccttcg-gaataaataataatttaagatcatagt 17026348  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 350 - 439
Target Start/End: Complemental strand, 17556928 - 17556840
Alignment:
Q  350 gtcccttcagatataagaatggttttaagagcgtaatctcttcgatatttttatgtcctttaagaataaataatattttaagatcatagt 439  Q
    |||||||| ||  |||||||||| |||||  | || || ||||||||| |||||||||||   |||||||||||| ||||||||||||||    
T  17556928 gtcccttcggaattaagaatggtcttaagttcatagtcccttcgatatgtttatgtccttcg-gaataaataataatttaagatcatagt 17556840  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 55; Significance: 2e-22; HSPs: 7)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 337 - 459
Target Start/End: Complemental strand, 16372920 - 16372798
Alignment:
Q  337 tttttggtataacgtcccttcagatataagaatggttttaagagcgtaatctcttcgatatttttatgtcctttaagaataaataatattttaagatcat 436  Q
    |||||||||||| |||||||| ||  |||||||||| |||||| | || || ||||||||||||||||||| ||  |||||||||||| |||||||||||    
T  16372920 tttttggtataatgtcccttcggaattaagaatggtcttaagaacatagtcccttcgatatttttatgtcccttcggaataaataatagtttaagatcat 16372821  T
Q  437 agtctcattttcgggatgatgtc 459  Q
    |||| | ||||||| || |||||    
T  16372820 agtccctttttcggtataatgtc 16372798  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 337 - 437
Target Start/End: Complemental strand, 4580021 - 4579921
Alignment:
Q  337 tttttggtataacgtcccttcagatataagaatggttttaagagcgtaatctcttcgatatttttatgtcctttaagaataaataatattttaagatcat 436  Q
    |||| ||||||| |||  ||||||  ||||||||||||||||||| || || |||||||| ||||| |||| ||   |||||||||||||||||||||||    
T  4580021 ttttcggtataatgtcatttcagaattaagaatggttttaagagcatagtcccttcgataattttaagtcccttcgaaataaataatattttaagatcat 4579922  T
Q  437 a 437  Q
    |    
T  4579921 a 4579921  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 399 - 440
Target Start/End: Complemental strand, 8076486 - 8076445
Alignment:
Q  399 tttatgtcctttaagaataaataatattttaagatcatagtc 440  Q
    |||||||| ||| |||||||||||||||||||||||||||||    
T  8076486 tttatgtctttttagaataaataatattttaagatcatagtc 8076445  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 399 - 440
Target Start/End: Original strand, 9650617 - 9650658
Alignment:
Q  399 tttatgtcctttaagaataaataatattttaagatcatagtc 440  Q
    |||||||| ||| |||||||||||||||||||||||||||||    
T  9650617 tttatgtctttttagaataaataatattttaagatcatagtc 9650658  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 399 - 440
Target Start/End: Complemental strand, 23866509 - 23866468
Alignment:
Q  399 tttatgtcctttaagaataaataatattttaagatcatagtc 440  Q
    |||||||| ||| |||||||||||||||||||||||||||||    
T  23866509 tttatgtctttttagaataaataatattttaagatcatagtc 23866468  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 362 - 450
Target Start/End: Complemental strand, 27256710 - 27256623
Alignment:
Q  362 ataagaatggttttaagagcgtaatctcttcgatatttttatgtcctttaagaataaataatattttaagatcatagtctcattttcgg 450  Q
    ||||||||||| |||||||| || || |||| || | ||||||||  || ||||||||||||||||||||||||| ||| | |||||||    
T  27256710 ataagaatggtcttaagagcatagtcccttcaat-tatttatgtctctttagaataaataatattttaagatcatggtccctttttcgg 27256623  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 412 - 440
Target Start/End: Complemental strand, 9008584 - 9008556
Alignment:
Q  412 agaataaataatattttaagatcatagtc 440  Q
    |||||||||||||||||||||||||||||    
T  9008584 agaataaataatattttaagatcatagtc 9008556  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 50; Significance: 2e-19; HSPs: 11)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 349 - 450
Target Start/End: Original strand, 19094079 - 19094179
Alignment:
Q  349 cgtcccttcagatataagaatggttttaagagcgtaatctcttcgatatttttatgtcctttaagaataaataatattttaagatcatagtctcattttc 448  Q
    ||||||||| ||  |||||||||| |||||||| || ||  ||| ||||||||||||||||| |||||||||||||||||||||||||| || |||||||    
T  19094079 cgtcccttcggaattaagaatggtcttaagagcatactcctttcaatatttttatgtcctttcagaataaataatattttaagatcataatc-cattttc 19094177  T
Q  449 gg 450  Q
    ||    
T  19094178 gg 19094179  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 44; E-Value: 7e-16
Query Start/End: Original strand, 337 - 440
Target Start/End: Original strand, 42926215 - 42926317
Alignment:
Q  337 tttttggtataacgtcccttcagatataagaatggttttaagagcgtaatctcttcgatatttttatgtcctttaagaataaataatattttaagatcat 436  Q
    |||| ||| ||| |||||||||||  |||||||||| |||||  | || || ||||||||||||||||||||||  |||||||||||| |||||||||||    
T  42926215 ttttcggtttaatgtcccttcagaattaagaatggtattaagttcatagtcccttcgatatttttatgtccttt-ggaataaataataatttaagatcat 42926313  T
Q  437 agtc 440  Q
    ||||    
T  42926314 agtc 42926317  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 364 - 450
Target Start/End: Original strand, 10160345 - 10160429
Alignment:
Q  364 aagaatggttttaagagcgtaatctcttcgatatttttatgtcctttaagaataaataatattttaagatcatagtctcattttcgg 450  Q
    ||||||||| |||||||| || || |||| || | |||||||||||| |||||||| |||||||||||||||||||| |||||||||    
T  10160345 aagaatggtcttaagagcatagtcccttcaat-tatttatgtccttttagaataaagaatattttaagatcatagtc-cattttcgg 10160429  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 399 - 440
Target Start/End: Complemental strand, 30658615 - 30658574
Alignment:
Q  399 tttatgtcctttaagaataaataatattttaagatcatagtc 440  Q
    |||||||||||| |||||||||||||||||||||||||||||    
T  30658615 tttatgtccttttagaataaataatattttaagatcatagtc 30658574  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 364 - 440
Target Start/End: Complemental strand, 30643594 - 30643519
Alignment:
Q  364 aagaatggttttaagagcgtaatctcttcgatatttttatgtcctttaagaataaataatattttaagatcatagtc 440  Q
    ||||||||| |||||||| || || |||| || | |||||||||||| |||||||| ||||||||||||||||||||    
T  30643594 aagaatggtcttaagagcatagtcccttcaat-tatttatgtccttttagaataaagaatattttaagatcatagtc 30643519  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 389 - 460
Target Start/End: Complemental strand, 29678227 - 29678157
Alignment:
Q  389 cttcgatatttttatgtcctttaagaataaataatattttaagatcatagtctcattttcgggatgatgtcc 460  Q
    |||||||||||||||||||||   |||||||||||| ||||||||||||||| | ||||||| || ||||||    
T  29678227 cttcgatatttttatgtccttcg-gaataaataataatttaagatcatagtccctttttcggtataatgtcc 29678157  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 350 - 440
Target Start/End: Complemental strand, 30651426 - 30651337
Alignment:
Q  350 gtcccttcagatataagaatggttttaagagcgtaatctcttcgatatttttatgtcctttaagaataaataatattttaagatcatagtc 440  Q
    |||||||| ||  |||||||||| |||||  | || || |||||||||||||||||||||   |||||||||||| |||||||||||||||    
T  30651426 gtcccttcggaattaagaatggtcttaagttcatagtcccttcgatatttttatgtccttcg-gaataaataataatttaagatcatagtc 30651337  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 362 - 436
Target Start/End: Original strand, 6297513 - 6297586
Alignment:
Q  362 ataagaatggttttaagagcgtaatctcttcgatatttttatgtcctttaagaataaataatattttaagatcat 436  Q
    ||||||||||| |||||||| || || |||| || | ||||||||  || |||||||||||||||||||||||||    
T  6297513 ataagaatggtcttaagagcatagtcccttcaat-tatttatgtctctttagaataaataatattttaagatcat 6297586  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 367 - 439
Target Start/End: Original strand, 13291135 - 13291207
Alignment:
Q  367 aatggttttaagagcgtaatctcttcgatatttttatgtcctttaagaataaataata-ttttaagatcatagt 439  Q
    |||||| |||||||  ||||| |||||||| ||| |||||| ||||||||||||| || |||||||||||||||    
T  13291135 aatggtcttaagagtataatcccttcgataattt-atgtcccttaagaataaatagtatttttaagatcatagt 13291207  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 399 - 440
Target Start/End: Complemental strand, 35602363 - 35602322
Alignment:
Q  399 tttatgtcctttaagaataaataatattttaagatcatagtc 440  Q
    |||||||| ||| |||||||| ||||||||||||||||||||    
T  35602363 tttatgtctttttagaataaagaatattttaagatcatagtc 35602322  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 363 - 435
Target Start/End: Original strand, 7737461 - 7737532
Alignment:
Q  363 taagaatggttttaagagcgtaatctcttcgatatttttatgtcctttaagaataaataatattttaagatca 435  Q
    |||||||||| |||||  | || |||||||||||||||||||||| ||  |||||||||||  ||||||||||    
T  7737461 taagaatggtcttaagttcatagtctcttcgatatttttatgtcc-ttcggaataaataattatttaagatca 7737532  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 45; Significance: 2e-16; HSPs: 5)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 342 - 450
Target Start/End: Original strand, 35456539 - 35456646
Alignment:
Q  342 ggtataacgtcccttcagatataagaatggttttaagagcgtaatctcttcgatatttttatgtcctttaagaataaataatattttaagatcatagtct 441  Q
    ||||||| |||||||| ||  |||||||||| |||||||| ||||||||| |||| ||| ||||||  | | ||||||||||||||||||||||||||||    
T  35456539 ggtataatgtcccttcggaattaagaatggtcttaagagcataatctctttgatagttt-atgtcccatcaaaataaataatattttaagatcatagtct 35456637  T
Q  442 cattttcgg 450  Q
      |||||||    
T  35456638 ttttttcgg 35456646  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 362 - 450
Target Start/End: Original strand, 45904166 - 45904252
Alignment:
Q  362 ataagaatggttttaagagcgtaatctcttcgatatttttatgtcctttaagaataaataatattttaagatcatagtctcattttcgg 450  Q
    ||||||||||| |||||||| || || |||| || | ||||||||  || ||||||||||||||||||||||||| ||| |||||||||    
T  45904166 ataagaatggtcttaagagcatagtcccttcaat-tatttatgtctctttagaataaataatattttaagatcatggtc-cattttcgg 45904252  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 399 - 440
Target Start/End: Complemental strand, 49019842 - 49019801
Alignment:
Q  399 tttatgtcctttaagaataaataatattttaagatcatagtc 440  Q
    ||||||||| || | |||||||||||||||||||||||||||    
T  49019842 tttatgtccctttaaaataaataatattttaagatcatagtc 49019801  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 362 - 450
Target Start/End: Original strand, 10585810 - 10585897
Alignment:
Q  362 ataagaatggttttaagagcgtaatctcttcgatatttttatgtcctttaagaataaataatattttaagatcatagtctcattttcgg 450  Q
    ||||||||||| |||||||| || || |||| || | ||||||||   | ||||||||||||||||||||||||| ||| | |||||||    
T  10585810 ataagaatggtcttaagagcatagtcccttcaat-tatttatgtctcattagaataaataatattttaagatcatggtccctttttcgg 10585897  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 400 - 440
Target Start/End: Complemental strand, 28125565 - 28125525
Alignment:
Q  400 ttatgtcctttaagaataaataatattttaagatcatagtc 440  Q
    |||||||  ||||||||||||||||| ||||||||||||||    
T  28125565 ttatgtctcttaagaataaataatatcttaagatcatagtc 28125525  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0045 (Bit Score: 43; Significance: 0.000000000000003; HSPs: 1)
Name: scaffold0045
Description:

Target: scaffold0045; HSP #1
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 328 - 450
Target Start/End: Complemental strand, 83560 - 83440
Alignment:
Q  328 atagtcccttttttggtataacgtcccttcagatataagaatggttttaagagcgtaatctcttcgatatttttatgtcctttaagaataaataatattt 427  Q
    ||||||||||| | ||||||  |||||||||||   ||||| ||| |||||||| || || |||| ||| ||| || |||||| ||||||||||||||||    
T  83560 atagtccctttgtcggtatattgtcccttcagaatcaagaacggtcttaagagcatagtcccttcaataattt-atatccttttagaataaataatattt 83462  T
Q  428 taagatcatagtctcattttcgg 450  Q
    ||||||||||||| |||||||||    
T  83461 taagatcatagtc-cattttcgg 83440  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 42; Significance: 0.00000000000001; HSPs: 7)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 327 - 440
Target Start/End: Complemental strand, 7882516 - 7882404
Alignment:
Q  327 catagtcccttttttggtataacgtcccttcagatataagaatggttttaagagcgtaatctcttcgatatttttatgtcctttaagaataaataatatt 426  Q
    |||||||||||||| ||||||| |||||||||||  |||||||||| |||||  |  | || || |||||||||||||||| ||  |||| ||||||| |    
T  7882516 catagtccctttttcggtataatgtcccttcagaattaagaatggtcttaagttcagagtccctccgatatttttatgtcc-ttcggaatgaataatact 7882418  T
Q  427 ttaagatcatagtc 440  Q
    ||||||||||||||    
T  7882417 ttaagatcatagtc 7882404  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 350 - 460
Target Start/End: Complemental strand, 16833983 - 16833874
Alignment:
Q  350 gtcccttcagatataagaatggttttaagagcgtaatctcttcgatatttttatgtcctttaagaataaataatattttaagatcatagtctcattttcg 449  Q
    |||||||| ||  |||||||||| |||||  | || || ||||||||||||||||||||||  |||||||||||| ||||||||||||||  | ||||||    
T  16833983 gtcccttcggaattaagaatggtcttaagttcatagtcccttcgatatttttatgtccttt-ggaataaataataatttaagatcatagttcctttttcg 16833885  T
Q  450 ggatgatgtcc 460  Q
    | || ||||||    
T  16833884 gtataatgtcc 16833874  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 389 - 460
Target Start/End: Original strand, 23192453 - 23192523
Alignment:
Q  389 cttcgatatttttatgtcctttaagaataaataatattttaagatcatagtctcattttcgggatgatgtcc 460  Q
    |||||||||||||||||||||   |||||||||||| ||||||||||||||  ||||||||| || ||||||    
T  23192453 cttcgatatttttatgtccttcc-gaataaataataatttaagatcatagtaccattttcggtataatgtcc 23192523  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 362 - 450
Target Start/End: Original strand, 41097579 - 41097666
Alignment:
Q  362 ataagaatggttttaagagcgtaatctcttcgatatttttatgtcctttaagaataaataatattttaagatcatagtctcattttcgg 450  Q
    ||||||||||| |||||||| || || |||| || | ||||||||  || ||||||||||||||||||||||||| ||| | |||||||    
T  41097579 ataagaatggtcttaagagcatagtcccttcaat-tatttatgtctctttagaataaataatattttaagatcatggtccctttttcgg 41097666  T

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Target: chr1; HSP #5
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 362 - 440
Target Start/End: Complemental strand, 33055517 - 33055440
Alignment:
Q  362 ataagaatggttttaagagcgtaatctcttcgatatttttatgtcctttaagaataaataatattttaagatcatagtc 440  Q
    ||||||||||| |||||||  || || |||| || | ||||||||  || |||||||||||||||||||||||||||||    
T  33055517 ataagaatggtgttaagaggatagtcccttcaat-tgtttatgtctctttagaataaataatattttaagatcatagtc 33055440  T

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Target: chr1; HSP #6
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 399 - 440
Target Start/End: Original strand, 40233021 - 40233062
Alignment:
Q  399 tttatgtcctttaagaataaataatattttaagatcatagtc 440  Q
    ||||||||  || |||||||||||||||||||||||||||||    
T  40233021 tttatgtctctttagaataaataatattttaagatcatagtc 40233062  T

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Target: chr1; HSP #7
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 412 - 440
Target Start/End: Original strand, 17214110 - 17214138
Alignment:
Q  412 agaataaataatattttaagatcatagtc 440  Q
    |||||||||||||||||||||||||||||    
T  17214110 agaataaataatattttaagatcatagtc 17214138  T

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Target: chr6 (Bit Score: 38; Significance: 0.000000000003; HSPs: 6)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 399 - 440
Target Start/End: Original strand, 15991307 - 15991348
Alignment:
Q  399 tttatgtcctttaagaataaataatattttaagatcatagtc 440  Q
    ||||||||| ||||||||||||||||||||||||||||||||    
T  15991307 tttatgtcccttaagaataaataatattttaagatcatagtc 15991348  T

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Target: chr6; HSP #2
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 364 - 440
Target Start/End: Original strand, 24588803 - 24588878
Alignment:
Q  364 aagaatggttttaagagcgtaatctcttcgatatttttatgtcctttaagaataaataatattttaagatcatagtc 440  Q
    ||||||||| |||||||| ||||| |||| || | |||||||| ||| |||||||||||||||||||||||| ||||    
T  24588803 aagaatggtcttaagagcataatcccttcaat-tatttatgtctttttagaataaataatattttaagatcacagtc 24588878  T

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Target: chr6; HSP #3
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 344 - 450
Target Start/End: Complemental strand, 17914103 - 17913998
Alignment:
Q  344 tataacgtcccttcagatataagaatggttttaagagcgtaatctcttcgatatttttatgtcctttaagaataaataatattttaagatcatagtctca 443  Q
    ||||| |||||||| ||  |||||||||| ||||| || || || ||| |||||| |||||| |||    |||||||||||||||||||||||||||||     
T  17914103 tataatgtcccttcggaattaagaatggtcttaagtgcatagtccctttgatattattatgttcttcgc-aataaataatattttaagatcatagtctct 17914005  T
Q  444 ttttcgg 450  Q
    |||||||    
T  17914004 ttttcgg 17913998  T

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Target: chr6; HSP #4
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 360 - 440
Target Start/End: Original strand, 6112399 - 6112478
Alignment:
Q  360 atataagaatggttttaagagcgtaatctcttcgatatttttatgtcctttaagaataaataatattttaagatcatagtc 440  Q
    ||||||||||||| |||||||| || || |||| || | ||||||||  |  |||||||||||||||||||||||||||||    
T  6112399 atataagaatggtcttaagagcatagtcccttcaat-tgtttatgtctctctagaataaataatattttaagatcatagtc 6112478  T

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Target: chr6; HSP #5
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 389 - 460
Target Start/End: Complemental strand, 14509442 - 14509374
Alignment:
Q  389 cttcgatatttttatgtcctttaagaataaataatattttaagatcatagtctcattttcgggatgatgtcc 460  Q
    |||||||||||||||||||||   | |||||||||| ||||||||||||||||| ||||||| || ||||||    
T  14509442 cttcgatatttttatgtccttc--gtataaataataatttaagatcatagtctc-ttttcggtataatgtcc 14509374  T

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Target: chr6; HSP #6
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 337 - 397
Target Start/End: Complemental strand, 22610068 - 22610008
Alignment:
Q  337 tttttggtataacgtcccttcagatataagaatggttttaagagcgtaatctcttcgatat 397  Q
    |||| ||||||| ||| |||| ||  ||||||||||||||||||| || ||||||||||||    
T  22610068 ttttcggtataatgtcacttcggaattaagaatggttttaagagcatagtctcttcgatat 22610008  T

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Target: scaffold0002 (Bit Score: 37; Significance: 0.00000000001; HSPs: 1)
Name: scaffold0002
Description:

Target: scaffold0002; HSP #1
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 350 - 450
Target Start/End: Complemental strand, 4572 - 4473
Alignment:
Q  350 gtcccttcagatataagaatggttttaagagcgtaatctcttcgatatttttatgtcctttaagaataaataatattttaagatcatagtctcattttcg 449  Q
    |||||||| ||  |||||||||| |||||  | || || |||||||||||||||||||||   |||||||||||| ||||||||||||||| | ||||||    
T  4572 gtcccttcggaattaagaatggtcttaagttcatagtcccttcgatatttttatgtccttcg-gaataaataataatttaagatcatagtccctttttcg 4474  T

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Target: scaffold1450 (Bit Score: 36; Significance: 0.00000000004; HSPs: 1)
Name: scaffold1450
Description:

Target: scaffold1450; HSP #1
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 57 - 96
Target Start/End: Complemental strand, 1587 - 1548
Alignment:
Q  57 acttgaaagagctagaacttgacattattgattatttgca 96  Q
    |||||||||||||||||||| |||||||||||||||||||    
T  1587 acttgaaagagctagaacttcacattattgattatttgca 1548  T

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Target: chr5 (Bit Score: 35; Significance: 0.0000000002; HSPs: 4)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 350 - 440
Target Start/End: Complemental strand, 39518907 - 39518818
Alignment:
Q  350 gtcccttcagatataagaatggttttaagagcgtaatctcttcgatatttttatgtcctttaagaataaataatattttaagatcatagtc 440  Q
    |||||||| ||  |||||||||| |||||  | || || |||||||||||||||||||||   |||||||||||| |||||||||||||||    
T  39518907 gtcccttcggaattaagaatggtcttaagttcatagtcccttcgatatttttatgtccttcg-gaataaataataatttaagatcatagtc 39518818  T

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Target: chr5; HSP #2
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 350 - 440
Target Start/End: Complemental strand, 39523546 - 39523457
Alignment:
Q  350 gtcccttcagatataagaatggttttaagagcgtaatctcttcgatatttttatgtcctttaagaataaataatattttaagatcatagtc 440  Q
    |||||||| ||  |||||||||| |||||  | || || |||||||||||||||||||||   |||||||||||| |||||||||||||||    
T  39523546 gtcccttcggaattaagaatggtcttaagttcatagtcccttcgatatttttatgtccttcg-gaataaataataatttaagatcatagtc 39523457  T

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Target: chr5; HSP #3
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 399 - 440
Target Start/End: Original strand, 12044793 - 12044834
Alignment:
Q  399 tttatgtcctttaagaataaataatattttaagatcatagtc 440  Q
    |||||||||||| |||||||| ||||||||||||||||||||    
T  12044793 tttatgtccttttagaataaagaatattttaagatcatagtc 12044834  T

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Target: chr5; HSP #4
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 355 - 450
Target Start/End: Complemental strand, 31732018 - 31731924
Alignment:
Q  355 ttcagatataagaatggttttaagagcgtaatctcttcgatatttttatgtcctttaagaataaataatattttaagatcatagtctcattttcgg 450  Q
    |||||| ||||||||||| |||||||| ||  | |||| || | ||||||||  || ||||||||||||||||||||||||| ||| | |||||||    
T  31732018 ttcagaaataagaatggtcttaagagcatagccccttcaat-tatttatgtctctttagaataaataatattttaagatcatggtccctttttcgg 31731924  T

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Target: scaffold0628 (Bit Score: 32; Significance: 0.00000001; HSPs: 1)
Name: scaffold0628
Description:

Target: scaffold0628; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 365 - 436
Target Start/End: Complemental strand, 6859 - 6790
Alignment:
Q  365 agaatggttttaagagcgtaatctcttcgatatttttatgtcctttaagaataaataatattttaagatcat 436  Q
    ||||||||||||||||| || ||||||| || ||||||||||  || ||||||||||| |||||||||||||    
T  6859 agaatggttttaagagcatagtctcttc-at-tttttatgtctctttagaataaataacattttaagatcat 6790  T

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Target: scaffold0020 (Bit Score: 32; Significance: 0.00000001; HSPs: 1)
Name: scaffold0020
Description:

Target: scaffold0020; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 362 - 449
Target Start/End: Original strand, 861 - 947
Alignment:
Q  362 ataagaatggttttaagagcgtaatctcttcgatatttttatgtcctttaagaataaataatattttaagatcatagtctcattttcg 449  Q
    ||||||||||| |||||||| || || |||| || | ||||||||  || ||||||||||||||||||||||||| ||| | ||||||    
T  861 ataagaatggtcttaagagcatagtcccttcaat-tatttatgtctctttagaataaataatattttaagatcatggtccctttttcg 947  T

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Target: scaffold0060 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: scaffold0060
Description:

Target: scaffold0060; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 355 - 436
Target Start/End: Original strand, 47586 - 47666
Alignment:
Q  355 ttcagatataagaatggttttaagagcgtaatctcttcgatatttttatgtcctttaagaataaataatattttaagatcat 436  Q
    |||||| ||||||||||| |||||||| ||  | |||| || | ||||||||  || |||||||||||||||||||||||||    
T  47586 ttcagaaataagaatggtcttaagagcatagccccttcaat-tatttatgtctctttagaataaataatattttaagatcat 47666  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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