View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5746_low_20 (Length: 460)
Name: NF5746_low_20
Description: NF5746
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5746_low_20 |
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Alignment Details
Target: chr3 (Bit Score: 326; Significance: 0; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 326; E-Value: 0
Query Start/End: Original strand, 100 - 441
Target Start/End: Complemental strand, 29122407 - 29122066
Alignment:
| Q |
100 |
taggtatattcaatattatttgtacataagacacagacgcaaatgtcttgaagatggcaacttcacatattctgtcccatatatgggccacaggaacatt |
199 |
Q |
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| T |
29122407 |
taggtatattcaatattatttgtacataagacacagacgcaaatgtcttgaagatggcaacttcacatattctgtcccatatatgggccacaggaacatt |
29122308 |
T |
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| Q |
200 |
aacatagatatatcatcacaatgaaacaaagaagaaaagaatgataccaatagttccctcttagaaattctcatactcattggccattgcaaatgttctt |
299 |
Q |
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| T |
29122307 |
aacatagatatatcaccacaatgaaacaaagaagaaaagaatgataccaatagttccctcttagaaattttcatactcattggccattgcaaatgttctt |
29122208 |
T |
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| Q |
300 |
tctcccactcttgcacctttgcatgggtcccaattcatacataatgtacaaagtataaatagccatggatataaattgagacatatctccttgtagaaac |
399 |
Q |
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| T |
29122207 |
tctcccactcttgcacctttgcatgggtcccaattcatacataatgtacaaagtataaatagccatgcatataaattgagacatatctccttgtagaaac |
29122108 |
T |
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| Q |
400 |
aataaatatatacaatatcttcaatttaattcatggcttctg |
441 |
Q |
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| T |
29122107 |
aacaaatatatacaatatcttcaatttaattcatggcttctg |
29122066 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 64; E-Value: 8e-28
Query Start/End: Original strand, 1 - 80
Target Start/End: Complemental strand, 29122558 - 29122479
Alignment:
| Q |
1 |
ttttaaaataatttttagtggattgataatgaattgttttatccacccattatcatccaatccatccattttgttcctcc |
80 |
Q |
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| T |
29122558 |
ttttaaaacaatttttagtggatcgataatggattgttttatccacccattatcatccaatccatccattttgttactcc |
29122479 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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