View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF5746_low_26 (Length: 433)

Name: NF5746_low_26
Description: NF5746
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF5746_low_26
NF5746_low_26
[»] chr3 (3 HSPs)
chr3 (10-219)||(1138409-1138618)
chr3 (266-386)||(1138665-1138785)
chr3 (34-75)||(28802764-28802805)
[»] chr2 (2 HSPs)
chr2 (34-71)||(3110531-3110568)
chr2 (38-75)||(28044709-28044746)
[»] chr1 (3 HSPs)
chr1 (34-75)||(6025961-6026002)
chr1 (36-71)||(1118941-1118976)
chr1 (34-79)||(26161596-26161641)
[»] chr5 (1 HSPs)
chr5 (40-72)||(28734169-28734201)
[»] chr7 (2 HSPs)
chr7 (37-80)||(32888960-32889003)
chr7 (36-72)||(7245942-7245978)
[»] chr6 (3 HSPs)
chr6 (36-70)||(2730831-2730865)
chr6 (35-72)||(26373115-26373152)
chr6 (331-379)||(18699812-18699860)
[»] chr4 (3 HSPs)
chr4 (37-75)||(207500-207538)
chr4 (34-71)||(47789196-47789233)
chr4 (316-344)||(51034024-51034052)


Alignment Details
Target: chr3 (Bit Score: 194; Significance: 1e-105; HSPs: 3)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 194; E-Value: 1e-105
Query Start/End: Original strand, 10 - 219
Target Start/End: Original strand, 1138409 - 1138618
Alignment:
Q  10 attatactatgttacaatgctttagctatagccactatttgacaactctttgtactaaatagcataccactcttgcagtggattatttaccttcatacag 109  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  1138409 attatactatgttacaatgctttagctatagccactatttgacaactctttgtactaaatagcataccactcttgcagtggattatttaccttcatacag 1138508  T
Q  110 ctacgacagagtggtcgatattgaaccaccgtcgtgatgtccccatctttcgttcacacattagcttcaaaaaatgccattttcatttctccacattatt 209  Q
    ||||||||||||||||||||||||||||||||| ||||||||||||||||| |||||| |||||||||||||||||||||||||||||||||||||||||    
T  1138509 ctacgacagagtggtcgatattgaaccaccgtcatgatgtccccatctttcattcacagattagcttcaaaaaatgccattttcatttctccacattatt 1138608  T
Q  210 tgtaacagac 219  Q
    ||| ||||||    
T  1138609 tgtgacagac 1138618  T

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Target: chr3; HSP #2
Raw Score: 117; E-Value: 2e-59
Query Start/End: Original strand, 266 - 386
Target Start/End: Original strand, 1138665 - 1138785
Alignment:
Q  266 caaacaaccaatcagaagaaaataaatgcaagcaaactgaagttttagtgtcgaagaagtaaacttggttctggaagttctgaagtgtttccatccagag 365  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||    
T  1138665 caaacaaccaatcagaagaaaataaatgcaagcaaactgaagttttagtgtcgaagaagtaaacttggttctggaagttctgaagtgtttccatcaagag 1138764  T
Q  366 atccacaatttcaatcacccc 386  Q
    |||||||||||||||||||||    
T  1138765 atccacaatttcaatcacccc 1138785  T

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Target: chr3; HSP #3
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 34 - 75
Target Start/End: Original strand, 28802764 - 28802805
Alignment:
Q  34 gctatagccactatttgacaactctttgtactaaatagcata 75  Q
    |||||||||||||||||||||| |||| || |||||||||||    
T  28802764 gctatagccactatttgacaacactttatattaaatagcata 28802805  T

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Target: chr2 (Bit Score: 34; Significance: 0.0000000006; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 34 - 71
Target Start/End: Original strand, 3110531 - 3110568
Alignment:
Q  34 gctatagccactatttgacaactctttgtactaaatag 71  Q
    |||||||||||||||||||||| |||||||||||||||    
T  3110531 gctatagccactatttgacaacgctttgtactaaatag 3110568  T

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Target: chr2; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 38 - 75
Target Start/End: Original strand, 28044709 - 28044746
Alignment:
Q  38 tagccactatttgacaactctttgtactaaatagcata 75  Q
    |||||||||||||||||| ||||||||||||| |||||    
T  28044709 tagccactatttgacaacactttgtactaaatcgcata 28044746  T

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Target: chr1 (Bit Score: 34; Significance: 0.0000000006; HSPs: 3)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 34 - 75
Target Start/End: Original strand, 6025961 - 6026002
Alignment:
Q  34 gctatagccactatttgacaactctttgtactaaatagcata 75  Q
    ||||||||||||||||||||||  ||||||||||||||||||    
T  6025961 gctatagccactatttgacaacattttgtactaaatagcata 6026002  T

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Target: chr1; HSP #2
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 36 - 71
Target Start/End: Complemental strand, 1118976 - 1118941
Alignment:
Q  36 tatagccactatttgacaactctttgtactaaatag 71  Q
    |||||||||||||||||||| |||||||||||||||    
T  1118976 tatagccactatttgacaacactttgtactaaatag 1118941  T

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Target: chr1; HSP #3
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 34 - 79
Target Start/End: Original strand, 26161596 - 26161641
Alignment:
Q  34 gctatagccactatttgacaactctttgtactaaatagcataccac 79  Q
    ||||||||  |||||||||||  |||||||||||||||||||||||    
T  26161596 gctatagctgctatttgacaatactttgtactaaatagcataccac 26161641  T

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Target: chr5 (Bit Score: 33; Significance: 0.000000002; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 40 - 72
Target Start/End: Original strand, 28734169 - 28734201
Alignment:
Q  40 gccactatttgacaactctttgtactaaatagc 72  Q
    |||||||||||||||||||||||||||||||||    
T  28734169 gccactatttgacaactctttgtactaaatagc 28734201  T

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Target: chr7 (Bit Score: 32; Significance: 0.00000001; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 37 - 80
Target Start/End: Complemental strand, 32889003 - 32888960
Alignment:
Q  37 atagccactatttgacaactctttgtactaaatagcataccact 80  Q
    ||||||||||||||||||  ||||||||||||||||||| ||||    
T  32889003 atagccactatttgacaatactttgtactaaatagcatatcact 32888960  T

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Target: chr7; HSP #2
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 36 - 72
Target Start/End: Original strand, 7245942 - 7245978
Alignment:
Q  36 tatagccactatttgacaactctttgtactaaatagc 72  Q
    ||||||| |||||||||||| ||||||||||||||||    
T  7245942 tatagccgctatttgacaacactttgtactaaatagc 7245978  T

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Target: chr6 (Bit Score: 31; Significance: 0.00000004; HSPs: 3)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 36 - 70
Target Start/End: Original strand, 2730831 - 2730865
Alignment:
Q  36 tatagccactatttgacaactctttgtactaaata 70  Q
    |||||||||||||||||||| ||||||||||||||    
T  2730831 tatagccactatttgacaacactttgtactaaata 2730865  T

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Target: chr6; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 35 - 72
Target Start/End: Complemental strand, 26373152 - 26373115
Alignment:
Q  35 ctatagccactatttgacaactctttgtactaaatagc 72  Q
    ||||| ||||||||||||||| ||||||||||||||||    
T  26373152 ctataaccactatttgacaacactttgtactaaatagc 26373115  T

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Target: chr6; HSP #3
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 331 - 379
Target Start/End: Original strand, 18699812 - 18699860
Alignment:
Q  331 tggttctggaagttctgaagtgtttccatccagagatccacaatttcaa 379  Q
    |||||||||||||| ||||||| |||| || ||||||| ||||||||||    
T  18699812 tggttctggaagttatgaagtgcttccttctagagatctacaatttcaa 18699860  T

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Target: chr4 (Bit Score: 31; Significance: 0.00000004; HSPs: 3)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 37 - 75
Target Start/End: Complemental strand, 207538 - 207500
Alignment:
Q  37 atagccactatttgacaactctttgtactaaatagcata 75  Q
    ||||||||||||||||||  |||||||||||||||||||    
T  207538 atagccactatttgacaatactttgtactaaatagcata 207500  T

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Target: chr4; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 34 - 71
Target Start/End: Complemental strand, 47789233 - 47789196
Alignment:
Q  34 gctatagccactatttgacaactctttgtactaaatag 71  Q
    ||||||||||||||||||||||  ||||||||||||||    
T  47789233 gctatagccactatttgacaacagtttgtactaaatag 47789196  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 316 - 344
Target Start/End: Original strand, 51034024 - 51034052
Alignment:
Q  316 tcgaagaagtaaacttggttctggaagtt 344  Q
    |||||||||||||||||||||||||||||    
T  51034024 tcgaagaagtaaacttggttctggaagtt 51034052  T

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