View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5746_low_27 (Length: 430)
Name: NF5746_low_27
Description: NF5746
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5746_low_27 |
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| [»] scaffold0533 (2 HSPs) |
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Alignment Details
Target: scaffold0533 (Bit Score: 288; Significance: 1e-161; HSPs: 2)
Name: scaffold0533
Description:
Target: scaffold0533; HSP #1
Raw Score: 288; E-Value: 1e-161
Query Start/End: Original strand, 1 - 376
Target Start/End: Complemental strand, 9277 - 8899
Alignment:
| Q |
1 |
acacctctcaaattgagatttagacacatgttttattttaacaatataattttgtaatttgatttggattagacgctggttggcgtttaagaaccgaaag |
100 |
Q |
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| T |
9277 |
acacctctcaaattgagatttaggcacatgttttattttaacaatataattttgtaatttgatttggattagacgctggttggcgtttaagaaccgaaag |
9178 |
T |
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| Q |
101 |
ttgatcaaatctattttattttttaccgttgatcaaatgagctattaattaagaccaggaaaaatgagttttttatttcatatgtaaagaatgaaatatt |
200 |
Q |
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| T |
9177 |
ttgatcaaatctattttattttttaccgttgatcaaatgagctattaattaagaccaggaaaaatgagttttttatttcatatgtaaagaatgaattatt |
9078 |
T |
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| Q |
201 |
aaaaacgttatatttgcatctaatataaatttgggctaaaggtagaccttactatttttagtaaattcaaataaaatatcatatttg---nnnnnnnnnn |
297 |
Q |
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| T |
9077 |
aaaaacgttatttttgcatctaatataaatttgggctaaaggtagatcttactatttttagtaaattcaaataaaatatcatatttgtttttaacttttt |
8978 |
T |
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| Q |
298 |
nnnnnaagaagttaaactaattcaccaaaattgacatcatgaatcaaacattataccttgtctccgtgagcttaactca |
376 |
Q |
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| T |
8977 |
tttttaagaagttaaactaattcatcaaaattgacatcatgaatcaaacatgatacattgtcttcgtgagcttaactca |
8899 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0533; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 378 - 414
Target Start/End: Complemental strand, 8821 - 8785
Alignment:
| Q |
378 |
ttgagaataaccgcacttcaaagattcaagccaacat |
414 |
Q |
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| T |
8821 |
ttgagaataaccgcacttcaaagactcaagccaacat |
8785 |
T |
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