View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5746_low_28 (Length: 418)
Name: NF5746_low_28
Description: NF5746
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5746_low_28 |
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| [»] chr7 (5 HSPs) |
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Alignment Details
Target: chr7 (Bit Score: 414; Significance: 0; HSPs: 5)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 414; E-Value: 0
Query Start/End: Original strand, 1 - 418
Target Start/End: Complemental strand, 25527236 - 25526819
Alignment:
| Q |
1 |
cacttacatgaattggtttcttaagcaaggaagagataaggacgccatggagtgttataagtctttattgaaccgcaagtgtaggatgagacctgaaact |
100 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
25527236 |
cacttacatgaattggtttcttaagcaaggaagagataaggacgccatggagtgttataagtctttattgaaccgcaagtgtaggatgagacctgaaact |
25527137 |
T |
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| Q |
101 |
ggcgatgttctcttggaggttttgctcaagtatggaaagaaaactgaggcttgggacttgtttcatgacatgttagacaatcacacgccttccacttttc |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
25527136 |
ggcgatgttctcttggaggttttgctcaagtatggaaagaaaactgaggcttgggacttgtttcatgacatgttagacaatcacacgccttccacttttc |
25527037 |
T |
|
| Q |
201 |
atgatgtcgactctgacacttttactttgatggtcgaggaatgcttgaagctcggtaaggttgatgaagcccttgcaactttgaagaaagttggaaccaa |
300 |
Q |
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||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
25527036 |
atggtgtcgactctgacacttttactttgatggtcgaggaatgcttgaagctcggtaaggttgatgaagcccttgcaactttgaagaaagttggaaccaa |
25526937 |
T |
|
| Q |
301 |
acctgattctaagccttttttcttggatgttgatggctactgtcagctcatctccattttctgtgcacatgatatgttgtctgaagctgagaatctattt |
400 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
25526936 |
acctgattctaagccttttttcttggatgttgatggctactgtcagctcatctccattttctgtgcacatgatatgttgtctgaagctgagaatctattt |
25526837 |
T |
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| Q |
401 |
caagatatgtactccatg |
418 |
Q |
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|||||||||||||||||| |
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| T |
25526836 |
caagatatgtactccatg |
25526819 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 247; E-Value: 1e-137
Query Start/End: Original strand, 12 - 418
Target Start/End: Complemental strand, 25535257 - 25534851
Alignment:
| Q |
12 |
attggtttcttaagcaaggaagagataaggacgccatggagtgttataagtctttattgaaccgcaagtgtaggatgagacctgaaactggcgatgttct |
111 |
Q |
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|||||||| || |||||| |||||||||||| || |||||||||||||| || ||||||||||||||||||| |||||||||| ||||| || || | || |
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| T |
25535257 |
attggttttttgagcaagaaagagataaggaggctatggagtgttataactccttattgaaccgcaagtgtatgatgagacctaaaacttgcaatatgct |
25535158 |
T |
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| Q |
112 |
cttggaggttttgctcaagtatggaaagaaaactgaggcttgggacttgtttcatgacatgttagacaatcacacgccttccacttttcatgatgtcgac |
211 |
Q |
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||||||| ||||||||| || |||||| ||||| |||||||||||||||||||||| ||||||||||||||| || ||| |||||||||||| |||| || |
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| T |
25535157 |
cttggagattttgctcaggtttggaaaaaaaaccgaggcttgggacttgtttcatggcatgttagacaatcatacacctcccacttttcatgctgtcaac |
25535058 |
T |
|
| Q |
212 |
tctgacacttttactttgatggtcgaggaatgcttgaagctcggtaaggttgatgaagcccttgcaactttgaagaaagttggaaccaaacctgattcta |
311 |
Q |
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||||||||||||| |||||||||||| |||||||||||||| |||||| |||||||||||||||||||||||||||||||||||||||| |||||||||| |
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| T |
25535057 |
tctgacacttttattttgatggtcgatgaatgcttgaagcttggtaagattgatgaagcccttgcaactttgaagaaagttggaaccaagcctgattcta |
25534958 |
T |
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| Q |
312 |
agccttttttcttggatgttgatggctactgtcagctcatctccattttctgtgcacatgatatgttgtctgaagctgagaatctatttcaagatatgta |
411 |
Q |
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|||||||||||||||| |||||||| ||| | |||||||||||| |||| || | ||||||||||||||||||||||||||||||||||||| ||||| |
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| T |
25534957 |
ggccttttttcttggatattgatggcaactctaagctcatctccagtttcgatgaatatgatatgttgtctgaagctgagaatctatttcaagagatgta |
25534858 |
T |
|
| Q |
412 |
ctccatg |
418 |
Q |
| |
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||||||| |
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| T |
25534857 |
ctccatg |
25534851 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 215; E-Value: 1e-118
Query Start/End: Original strand, 30 - 418
Target Start/End: Original strand, 25515206 - 25515604
Alignment:
| Q |
30 |
gaagagataaggacgccatggagtgttataagtctttattgaaccgcaagtgtaggatg---agacctgaaactggcgatgttctcttggaggttttgct |
126 |
Q |
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||||||| ||||| || |||||||||||||| || ||||||||||||||||||| |||| |||||||||||| || || |||||||| ||||||||| |
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| T |
25515206 |
gaagagagaaggaggctatggagtgttataactccttattgaaccgcaagtgtacgatgatgagacctgaaacttgcaatattctcttgacggttttgct |
25515305 |
T |
|
| Q |
127 |
caagtatggaaagaaaactgaggcttgggacttgtttcatgacatgttagacaatcacacgccttccacttttcatgatgtcgactctgacacttttact |
226 |
Q |
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| || |||||| ||||||||||||||||||||||||||||||||||||||||||||||| ||| |||||||||||| ||| |||||| ||||||||| | |
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| T |
25515306 |
ctcgtctggaaaaaaaactgaggcttgggacttgtttcatgacatgttagacaatcacacacctcccacttttcatggtgttgactctaacacttttatt |
25515405 |
T |
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| Q |
227 |
ttgatggtcgaggaatgcttgaagctcggtaaggttgatgaagcccttgcaactttgaagaaag-------ttggaaccaaacctgattctaagcctttt |
319 |
Q |
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|||||||| | |||||||| ||||| ||||||||||||||||||||||||||||||||||||| |||||||||| |||||||||||||||||| |
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| T |
25515406 |
gtgatggtcaatgaatgcttcaagcttggtaaggttgatgaagcccttgcaactttgaagaaagttggaacttggaaccaagcctgattctaagcctttt |
25515505 |
T |
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| Q |
320 |
ttcttggatgttgatggctactgtcagctcatctccattttctgtgcacatgatatgttgtctgaagctgagaatctatttcaagatatgtactccatg |
418 |
Q |
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|||||||||||||||||| ||| | ||||||||||| |||||||| ||||||||||||||||||||||||||||||||||||| |||||||||||| |
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| T |
25515506 |
ttcttggatgttgatggcaactctaagctcatctcccttttctgtcataatgatatgttgtctgaagctgagaatctatttcaagagatgtactccatg |
25515604 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 49; E-Value: 7e-19
Query Start/End: Original strand, 14 - 126
Target Start/End: Complemental strand, 25538248 - 25538136
Alignment:
| Q |
14 |
tggtttcttaagcaaggaagagataaggacgccatggagtgttataagtctttattgaaccgcaagtgtaggatgagacctgaaactggcgatgttctct |
113 |
Q |
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|||||| ||||| | |||||||| ||||| |||||||||| |||| | || |||||||||| ||||| ||||||||||||||||||| || ||| ||| | |
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| T |
25538248 |
tggttttttaaggagggaagagaaaaggaagccatggagtcttatgactccttattgaaccacaagtttaggatgagacctgaaacttgcaatgctcttt |
25538149 |
T |
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| Q |
114 |
tggaggttttgct |
126 |
Q |
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||||||| ||||| |
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| T |
25538148 |
tggaggtgttgct |
25538136 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #5
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 345 - 418
Target Start/End: Complemental strand, 25544491 - 25544418
Alignment:
| Q |
345 |
agctcatctccattttctgtgcacatgatatgttgtctgaagctgagaatctatttcaagatatgtactccatg |
418 |
Q |
| |
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|||| ||||||| ||||||| | ||| ||| |||||| |||||||||||| |||||||| |||||||||||| |
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| T |
25544491 |
agcttatctccacgttctgtgaatatggtattttgtctaaagctgagaatcagtttcaagagatgtactccatg |
25544418 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 51; Significance: 4e-20; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 2 - 300
Target Start/End: Original strand, 43223775 - 43224073
Alignment:
| Q |
2 |
acttacatgaattggtttcttaagcaaggaagagataaggacgccatggagtgttataagtctttattgaaccgcaagtgtaggatgagacctgaaactg |
101 |
Q |
| |
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||||||||| | |||||| ||||||| |||||||||||||| || ||||| | ||||||||||| || | ||| ||| |||||||| ||||| |||| |
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| T |
43223775 |
acttacatggaatggttttttaagcagggaagagataaggaggctatggattcgtataagtctttcatggatcgcgagtttaggatgacacctgcaactt |
43223874 |
T |
|
| Q |
102 |
gcgatgttctcttggaggttttgctcaagtatggaaagaaaactgaggcttgggacttgtttcatgacatgttagacaatcacacgccttccacttttca |
201 |
Q |
| |
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| ||||||| |||||||||||||| ||| ||| ||||||| ||||||||| | |||||| || | ||||| || |||||||| ||| | | |||||| |
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| T |
43223875 |
gtaatgttctgttggaggttttgcttaagcatgataagaaaaaggaggcttggaaattgtttgatcagatgttggataatcacactcctcctaattttca |
43223974 |
T |
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| Q |
202 |
tgatgtcgactctgacacttttactttgatggtcgaggaatgcttgaagctcggtaaggttgatgaagcccttgcaactttgaagaaagttggaaccaa |
300 |
Q |
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| ||| | || || ||||||| | | ||||| | || ||||| |||| |||||| ||||||||||||||| ||||| | ||| ||||| ||||| |
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| T |
43223975 |
agctgttaattccgatacttttaatatcatggttaatgagtgctttaagcatggtaagtttgatgaagcccttgatacttttaggaaggttggtaccaa |
43224073 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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