View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5746_low_29 (Length: 414)
Name: NF5746_low_29
Description: NF5746
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5746_low_29 |
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Alignment Details
Target: chr1 (Bit Score: 376; Significance: 0; HSPs: 6)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 376; E-Value: 0
Query Start/End: Original strand, 12 - 395
Target Start/End: Complemental strand, 48145990 - 48145607
Alignment:
| Q |
12 |
agagaagagaaagaataaatgaaagattgagaatcttgcaaacccttgtcccaaatggaactaaggtagatttcttaattaattaatggaaattaaacta |
111 |
Q |
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| T |
48145990 |
agagaagagaaagaataaatgaaagattgagaatcttgcaaacccttgtcccaaatggaactaaggtagatttcttaatcaattaatggaaattgaacta |
48145891 |
T |
|
| Q |
112 |
acaattggttaaggtgtacaaattttcaatttttcattgtttgtgaattgtaggtagatattagcactatgcttgaggaagctgtccaatatgtgaagtt |
211 |
Q |
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| T |
48145890 |
acaattggttaaggtgtacaaattttcaatttttcattgtttgtgaattgtaggtagatattagcactatgcttgaggaagctgtccaatatgtgaagtt |
48145791 |
T |
|
| Q |
212 |
tttgcagcttcaaattaaggtaacaatttgagaaacttccatttttcaatttcttatatgcaaaagataaatattaattcattgtttatttatttatttg |
311 |
Q |
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| T |
48145790 |
tttgcagcttcaaattaaggtaacaatttgagaaacttccatttttcaatttcttatatgcaaaagataaatattaattcattgtttatttatttatttg |
48145691 |
T |
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| Q |
312 |
gatatgaaacagcttttaagctctgaagatatgtggatgtatgctccaattgcttacaatggaatgaacattggattagacctc |
395 |
Q |
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| T |
48145690 |
gatatgaaacagcttttaagctctgaagatatgtggatgtatgctccaattgcttacaatggaatgaacattggattagacctc |
48145607 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 235; E-Value: 1e-130
Query Start/End: Original strand, 13 - 395
Target Start/End: Complemental strand, 48150845 - 48150467
Alignment:
| Q |
13 |
gagaagagaaagaataaatgaaagattgagaatcttgcaaacccttgtcccaaatggaactaaggtagatttcttaattaatta----atggaaattaaa |
108 |
Q |
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| T |
48150845 |
gagaagagaaagaataaatgaaagattgagaatcttgcaaactcttgtcccaaatggaactaaggtagctttcttaatgacaaacaatattgaactatta |
48150746 |
T |
|
| Q |
109 |
ct-aacaattggttaaggtgtacaaattttcaatttttcattgtttgtgaattgtaggtagatattagcactatgcttgaggaagctgtccaatatgtga |
207 |
Q |
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| T |
48150745 |
ctcaataattggttaagatggtcaaattctcaaactttttttgtttgtgaattgtaggtggatattagcactatgcttgaggaagctgtccaatatgtga |
48150646 |
T |
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| Q |
208 |
agtttttgcagcttcaaattaaggtaacaatttgagaaacttccatttttcaatttcttatatgcaaaagataaatattaattcattgtttatttattta |
307 |
Q |
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| T |
48150645 |
agtttttgcagcttcaaattaaggtaactatttgagaaacttccaattttcaatttcttatatgcaaaagataaatattaattcattgtttatttattta |
48150546 |
T |
|
| Q |
308 |
tttggatatgaaacagcttttaagctctgaagatatgtggatgtatgctccaattgcttacaatggaatgaacattggattagacctc |
395 |
Q |
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| T |
48150545 |
tttggatatgaaacagcttttgagc---------atgtggatgtatgctccaattgcttacaatggaatgaacattggattagacctc |
48150467 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 155 - 234
Target Start/End: Complemental strand, 48140964 - 48140885
Alignment:
| Q |
155 |
tgaattgtaggtagatattagcactatgcttgaggaagctgtccaatatgtgaagtttttgcagcttcaaattaaggtaa |
234 |
Q |
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| T |
48140964 |
tgaattataggtggatatcagcaccatgcttgaggaagctgtgcaatatgtgaagtttttacaggtccaaattaaggtaa |
48140885 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 319 - 395
Target Start/End: Complemental strand, 48140727 - 48140651
Alignment:
| Q |
319 |
aacagcttttaagctctgaagatatgtggatgtatgctccaattgcttacaatggaatgaacattggattagacctc |
395 |
Q |
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| T |
48140727 |
aacagcttctgagctctgatgatcactggatgtatgctccaattgcttacaatggaatgaacattggactaaacctc |
48140651 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #5
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 322 - 374
Target Start/End: Complemental strand, 5272089 - 5272037
Alignment:
| Q |
322 |
agcttttaagctctgaagatatgtggatgtatgctccaattgcttacaatgga |
374 |
Q |
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||||||| |||||||| ||||||||||||||||| ||| |||||||||||||| |
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| T |
5272089 |
agcttttgagctctgatgatatgtggatgtatgcaccacttgcttacaatgga |
5272037 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #6
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 14 - 86
Target Start/End: Complemental strand, 48141103 - 48141031
Alignment:
| Q |
14 |
agaagagaaagaataaatgaaagattgagaatcttgcaaacccttgtcccaaatggaactaaggtagatttct |
86 |
Q |
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||||||||||||||||||||||| |||| |||| | |||| ||| ||||| |||||||| ||||||| ||||| |
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| T |
48141103 |
agaagagaaagaataaatgaaaggttgaaaatcctacaaagcctggtccctaatggaaccaaggtagctttct |
48141031 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 46; Significance: 4e-17; HSPs: 3)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 163 - 232
Target Start/End: Original strand, 279280 - 279349
Alignment:
| Q |
163 |
aggtagatattagcactatgcttgaggaagctgtccaatatgtgaagtttttgcagcttcaaattaaggt |
232 |
Q |
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| T |
279280 |
aggtggatatcagcaccatgcttgaggaagctgtccaatatgtgaaatttttacaacttcaaattaaggt |
279349 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 14 - 79
Target Start/End: Original strand, 279138 - 279203
Alignment:
| Q |
14 |
agaagagaaagaataaatgaaagattgagaatcttgcaaacccttgtcccaaatggaactaaggta |
79 |
Q |
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||||||||||||||||||||||| |||| |||| | |||| ||||||||| ||||||||||||||| |
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| T |
279138 |
agaagagaaagaataaatgaaaggttgaaaatcctacaaaaccttgtccccaatggaactaaggta |
279203 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 319 - 386
Target Start/End: Original strand, 279434 - 279501
Alignment:
| Q |
319 |
aacagcttttaagctctgaagatatgtggatgtatgctccaattgcttacaatggaatgaacattgga |
386 |
Q |
| |
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|||||||| |||||||||| || | ||||||||| |||| ||||||||||||||||||||||||||| |
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| T |
279434 |
aacagcttctaagctctgatgacacgtggatgtactctcccattgcttacaatggaatgaacattgga |
279501 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 39; Significance: 0.0000000000006; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 322 - 388
Target Start/End: Original strand, 47456885 - 47456951
Alignment:
| Q |
322 |
agcttttaagctctgaagatatgtggatgtatgctccaattgcttacaatggaatgaacattggatt |
388 |
Q |
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| T |
47456885 |
agcttctaagctctgatgatctgtggatgtatgctccaattgcttataatggacttgacattggatt |
47456951 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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