View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF5746_low_31 (Length: 398)

Name: NF5746_low_31
Description: NF5746
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF5746_low_31
NF5746_low_31
[»] chr2 (3 HSPs)
chr2 (88-289)||(31593169-31593366)
chr2 (329-373)||(31593102-31593146)
chr2 (164-290)||(28715673-28715798)
[»] chr7 (1 HSPs)
chr7 (164-268)||(30234915-30235019)
[»] chr6 (2 HSPs)
chr6 (176-290)||(30986432-30986545)
chr6 (193-289)||(30966576-30966671)
[»] chr4 (1 HSPs)
chr4 (123-179)||(1979073-1979129)


Alignment Details
Target: chr2 (Bit Score: 173; Significance: 6e-93; HSPs: 3)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 173; E-Value: 6e-93
Query Start/End: Original strand, 88 - 289
Target Start/End: Complemental strand, 31593366 - 31593169
Alignment:
Q  88 cacagtaaataaatggttggcacagtgttttgtggataaatagccaaacacataggttggcatagtgtttattttgtaccatgccattaatgaaattagt 187  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||    
T  31593366 cacagtaaataaatggttggcacagtgttttgtggataaatagccaaacacataggttggcatagtgtttattttgtaccgtgccattaatgaaattagt 31593267  T
Q  188 tgagacatggctctttcacttctataaataacatgctgttgcaccattgtttctcatcccagcatagaacaaagtgacacacacaacaagcgtcttgttc 287  Q
    ||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| ||||||||||||    |||||||||||||||||||    
T  31593266 tgagacatggctctttcacttctataaataacatgctcttgcaccattgtttctcatcccagcagagaacaaagtga----cacaacaagcgtcttgttc 31593171  T

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Target: chr2; HSP #2
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 329 - 373
Target Start/End: Complemental strand, 31593146 - 31593102
Alignment:
Q  329 tagtttttcctagagagtgttagtgttctcctatttacaagagac 373  Q
    |||||| ||||||||||||||| ||||||||||||||||||||||    
T  31593146 tagtttctcctagagagtgttattgttctcctatttacaagagac 31593102  T

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Target: chr2; HSP #3
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 164 - 290
Target Start/End: Original strand, 28715673 - 28715798
Alignment:
Q  164 taccatgccattaatgaaattagttgagacatggctctttcacttctataaataacatgctgttgcaccattgtttctcatcccagcatagaacaaagtg 263  Q
    |||| |||||| |||| || | |||| | ||||| ||||||||| ||||||||| |||||| |||||||||| |   |||||||| ||||||||||| |     
T  28715673 taccgtgccataaatgtaaatggttggggcatggttctttcactcctataaatagcatgctcttgcaccattctaaatcatcccatcatagaacaaatta 28715772  T
Q  264 acacacacaacaagcgtcttgttctag 290  Q
    ||||| | |||||| || |||||||||    
T  28715773 acaca-ataacaagtgttttgttctag 28715798  T

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Target: chr7 (Bit Score: 45; Significance: 2e-16; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 164 - 268
Target Start/End: Original strand, 30234915 - 30235019
Alignment:
Q  164 taccatgccattaatgaaattagttgagacatggctctttcacttctataaataacatgctgttgcaccattgtttctcatcccagcatagaacaaagtg 263  Q
    |||| |||||| |||| |||| |||| | |||||||||||||||  |||||||| |||| | ||| ||||||||||||||||||| || ||||||||||     
T  30234915 taccgtgccataaatgtaattggttggggcatggctctttcactagtataaatagcatgttcttgtaccattgtttctcatcccatcagagaacaaagta 30235014  T
Q  264 acaca 268  Q
    |||||    
T  30235015 acaca 30235019  T

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Target: chr6 (Bit Score: 35; Significance: 0.0000000001; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 176 - 290
Target Start/End: Original strand, 30986432 - 30986545
Alignment:
Q  176 aatgaaattagttgagacatggctctttcacttctataaataacatgctgttgcaccattgtttctcatcccagcatagaacaaagtgacacacacaaca 275  Q
    |||| |||| |||| | |||||||||||||||  |||||||| |||||| ||| || |||||| ||||  ||| || |||||||||| ||||| ||||||    
T  30986432 aatgtaattggttggggcatggctctttcactaatataaatagcatgctcttgtactattgttactcacaccatcacagaacaaagtaacaca-acaaca 30986530  T
Q  276 agcgtcttgttctag 290  Q
    || || |||||||||    
T  30986531 agtgttttgttctag 30986545  T

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Target: chr6; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 193 - 289
Target Start/End: Original strand, 30966576 - 30966671
Alignment:
Q  193 catggctctttcacttctataaataacatgctgttgcaccattgtttctcatcccagcatagaacaaagtgacacacacaacaagcgtcttgttcta 289  Q
    |||||||||||||||  |||||||| |||||| ||| ||||||||| ||||  ||| || |||||||||| ||||| ||| |||| || ||||||||    
T  30966576 catggctctttcactagtataaatagcatgctcttgtaccattgttcctcacaccatcacagaacaaagtaacaca-acagcaagtgttttgttcta 30966671  T

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Target: chr4 (Bit Score: 33; Significance: 0.000000002; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 123 - 179
Target Start/End: Original strand, 1979073 - 1979129
Alignment:
Q  123 ataaatagccaaacacataggttggcatagtgtttattttgtaccatgccattaatg 179  Q
    |||||||| |||||| || ||||||||||||||||||||| |||| |||||| ||||    
T  1979073 ataaatagtcaaacatattggttggcatagtgtttattttctaccgtgccataaatg 1979129  T

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