View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF5746_low_32 (Length: 397)

Name: NF5746_low_32
Description: NF5746
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF5746_low_32
NF5746_low_32
[»] chr4 (1 HSPs)
chr4 (13-397)||(37118316-37118692)


Alignment Details
Target: chr4 (Bit Score: 258; Significance: 1e-143; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 258; E-Value: 1e-143
Query Start/End: Original strand, 13 - 397
Target Start/End: Original strand, 37118316 - 37118692
Alignment:
Q  13 aatatccacggttgaaatccattttaataaattcttaattgagacggtaaagttgataccnnnnnnntaaagcaaactcactttatnnnnnnn-ggaatc 111  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||       |||||||||||||||||||        ||||||    
T  37118316 aatatccacggttgaaatccattttaataaattcttaattgagacggtaaagttgataccaaaaaaataaagcaaactcactttataaaaaaaaggaatc 37118415  T
Q  112 tgatggcattgaaccaaagtatattatttacgagccttgggatgtccaactagatcaccgcaatggaaaaacaaacgaatatgatgggnnnnnnnngacg 211  Q
    |||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||         |||    
T  37118416 tgatggcattgaaccaaagtatattattcacgagccttgggatgtccaactagatcaccgcaatggaaaaacaaacgaatatgatgggaagaaaaa-acg 37118514  T
Q  212 ttggaataattttctgtgattttagacgacttaaaaaggaattgataagtgacatttaacattttgaagacgtgactatatgtttctttctaaaaatatt 311  Q
    ||||||||||||||||||||||||||||||| |||| ||||||||||||||||||       ||||||||||||||||||||||||||||||||||||||    
T  37118515 ttggaataattttctgtgattttagacgactcaaaa-ggaattgataagtgacat-------tttgaagacgtgactatatgtttctttctaaaaatatt 37118606  T
Q  312 atttactttctcttttcctctataactcctcagcctcccaaacaggatgaactttcaccctatttttcttccatcaccaccaccac 397  Q
    ||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  37118607 attcactttctcttttcctctataactcctcagcctcccaaacaggatgaactttcaccctatttttcttccatcaccaccaccac 37118692  T

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