View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5746_low_35 (Length: 388)
Name: NF5746_low_35
Description: NF5746
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5746_low_35 |
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Alignment Details
Target: chr7 (Bit Score: 280; Significance: 1e-157; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 280; E-Value: 1e-157
Query Start/End: Original strand, 28 - 375
Target Start/End: Original strand, 20370381 - 20370726
Alignment:
| Q |
28 |
gcttcacttgtcgtttttagaaaaatatggtttgatgagagtttaggtnnnnnnnttaaaatatgtagtcgatttggttaaagtattgatgatttaaaag |
127 |
Q |
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| T |
20370381 |
gcttcacttgtcgtttttagaaaaatatggtttgatgagagtttaggtaaaaaatttaaaatatgtagtcgatttggttaaagtattgacgatttaaaag |
20370480 |
T |
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| Q |
128 |
aaagtctacataacatggcatatatagctgtgttcgtaggtggaaaatgggataatttactatgtgccgaaaagggatatttggtattttatcaaatagg |
227 |
Q |
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| T |
20370481 |
aaagtctacataacatggcatat--agctgtgttcgtaggtggaaaatgggatgatttattatgtgccaataaggaagatttggtattttatcaaatagg |
20370578 |
T |
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| Q |
228 |
gcaaattattattaagtgtcaaatgacgcaattagttttaaaatgataaatgagacaattaaattatcatgccaattgatgcaatattgagatcatggcc |
327 |
Q |
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| T |
20370579 |
gcaaattattattaagtgtcaaatgacgcaattagttttaaaatgataaatgagacaattaaattatcatgccaattgatgcaatattgagatcatggtc |
20370678 |
T |
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| Q |
328 |
tatgtgcatatcatggatcatttggataaagttctgttttttattgat |
375 |
Q |
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| T |
20370679 |
tatgtgcatatcatggatcatttggataaagttctgtttttaattgat |
20370726 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 89; E-Value: 8e-43
Query Start/End: Original strand, 151 - 371
Target Start/End: Complemental strand, 20404818 - 20404598
Alignment:
| Q |
151 |
atagctgtgttcgtaggtggaaaatgggataatttactatgtgccgaaaagggatatttggtattttatcaaatagggcaaattattattaagtgtcaaa |
250 |
Q |
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| T |
20404818 |
atagttgtgttcataggtggcaaatgaggtgatttactatgtactgaatatggagatttgatattttctcaaatagggaaaattattatcaactgccaaa |
20404719 |
T |
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| Q |
251 |
tgacgcaattagttttaaaatgataaatgagacaattaaattatcatgccaattgatgcaatattgagatcatggcctatgtgcatatcatggatcattt |
350 |
Q |
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| T |
20404718 |
tgacgcgattagttttcaaatgataaatgagacagttagtttttcatgccaattgacgcgatattcagatcatggtttatgttcatatcatggatcattt |
20404619 |
T |
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| Q |
351 |
ggataaagttctgttttttat |
371 |
Q |
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| T |
20404618 |
gtttaaatttccgttttttat |
20404598 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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