View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5746_low_37 (Length: 386)
Name: NF5746_low_37
Description: NF5746
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5746_low_37 |
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Alignment Details
Target: chr7 (Bit Score: 298; Significance: 1e-167; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 298; E-Value: 1e-167
Query Start/End: Original strand, 36 - 357
Target Start/End: Original strand, 14542194 - 14542515
Alignment:
| Q |
36 |
cttttcactaccctctttttcgtctcacaccatctccttgttaattctttctctactttcgacttcaatctcttatatatcgtcatcgttattctataag |
135 |
Q |
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| T |
14542194 |
cttttcactaccctctttttcgtctcacaccatctccttgttaattctttctctactttcgacttcaatctcttatatatcgtcatcgttattctataag |
14542293 |
T |
|
| Q |
136 |
tctcacttgtttttcttcctcattgtttgcgtcgagctcatttgtgaggaaatggtcacagatgtctctcattgttcattcctaagttcatttatcatgt |
235 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
14542294 |
tctcacttgtttttcttcctcattgtttgcgtcgagctcatttgtgaggaaatggtcacagatgtctctcattgttcattcctaagttcatttatcatgt |
14542393 |
T |
|
| Q |
236 |
ttaaatatgtgtatatgttcatttgttagcctttcagtgttaaatatgctctggtttttgtgtaataccnnnnnnnnattcatgtggttgacatgttcaa |
335 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| |
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| T |
14542394 |
ttaaatatgtgtatatgttcatttgttagcctttcagtgttaaatatgctctggtttttgtgtaataccttttttttattcatgtggttgacatgttcaa |
14542493 |
T |
|
| Q |
336 |
tgtgtttagatgagcaatacaa |
357 |
Q |
| |
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|||||||||||||||||||||| |
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| T |
14542494 |
tgtgtttagatgagcaatacaa |
14542515 |
T |
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