View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF5746_low_40 (Length: 365)

Name: NF5746_low_40
Description: NF5746
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF5746_low_40
NF5746_low_40
[»] chr4 (4 HSPs)
chr4 (1-213)||(2873612-2873824)
chr4 (232-365)||(2873817-2873950)
chr4 (127-202)||(2901380-2901455)
chr4 (138-202)||(2883510-2883574)
[»] chr2 (3 HSPs)
chr2 (122-197)||(44214023-44214098)
chr2 (138-197)||(44237002-44237061)
chr2 (169-197)||(44226188-44226216)
[»] chr7 (2 HSPs)
chr7 (139-197)||(39334417-39334475)
chr7 (139-197)||(39568129-39568187)
[»] chr1 (1 HSPs)
chr1 (139-203)||(2164586-2164650)


Alignment Details
Target: chr4 (Bit Score: 171; Significance: 9e-92; HSPs: 4)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 171; E-Value: 9e-92
Query Start/End: Original strand, 1 - 213
Target Start/End: Original strand, 2873612 - 2873824
Alignment:
Q  1 atgattatgattatgggtgaaaattgatgtccatacatgcaatggaacacccttttaatttggggattaatttaacataacttgcataatttannnnnnn 100  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||           
T  2873612 atgattatgattatgggtgaaaattgatgtccatacatgcaatggaacacccttttaatttggggattaatttaacataacttgcataatttatttttta 2873711  T
Q  101 nnnnnnngtgatgcatagatttgctatctgagttatgtagaagagaaaaagaagcaaagatcataccagacccagatattgatgtctacatgaaggtgag 200  Q
           |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  2873712 tttttttgtgatgcatagatttgctatctgagttatgtagaagagaaaaagaagcaaagatcataccagacccagatattgatgtctacatgaaggtgag 2873811  T
Q  201 aaagaaactacat 213  Q
    |||||||||||||    
T  2873812 aaagaaactacat 2873824  T

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Target: chr4; HSP #2
Raw Score: 122; E-Value: 2e-62
Query Start/End: Original strand, 232 - 365
Target Start/End: Original strand, 2873817 - 2873950
Alignment:
Q  232 aactacgttatgctatatatttctatagcatttgatgtaataatatatattcatctcaatgaattttgatatactaggcaacttcaactgaaggccaaga 331  Q
    |||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  2873817 aactacattatgctatatatttctatagcatttgatgtaataatatatattcatctcaatgaattttgatatactaggcaacttcaactgaaggccaaga 2873916  T
Q  332 ggaaagtctgataacagactatatgctgaaggta 365  Q
    ||||||||||||||| || |||||||||||||||    
T  2873917 ggaaagtctgataaccgattatatgctgaaggta 2873950  T

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Target: chr4; HSP #3
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 127 - 202
Target Start/End: Complemental strand, 2901455 - 2901380
Alignment:
Q  127 tctgagttatgtagaagagaaaaagaagcaaagatcataccagacccagatattgatgtctacatgaaggtgagaa 202  Q
    |||||||| | |||||||||||| ||||||||||| |  ||||||||||||||||||||||  |||||||| ||||    
T  2901455 tctgagttgtctagaagagaaaaggaagcaaagattaagccagacccagatattgatgtctttatgaaggtaagaa 2901380  T

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Target: chr4; HSP #4
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 138 - 202
Target Start/End: Original strand, 2883510 - 2883574
Alignment:
Q  138 tagaagagaaaaagaagcaaagatcataccagacccagatattgatgtctacatgaaggtgagaa 202  Q
    |||||||||||| |||||||| || |  |||||||||||| ||||||||| ||||||||||||||    
T  2883510 tagaagagaaaaggaagcaaatattaagccagacccagatgttgatgtcttcatgaaggtgagaa 2883574  T

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Target: chr2 (Bit Score: 36; Significance: 0.00000000003; HSPs: 3)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 122 - 197
Target Start/End: Complemental strand, 44214098 - 44214023
Alignment:
Q  122 tgctatctgagttatgtagaagagaaaaagaagcaaagatcataccagacccagatattgatgtctacatgaaggt 197  Q
    ||||||||||| | | ||||||||| || | |||||| ||||  || |||||||||||||||||||||||||||||    
T  44214098 tgctatctgagctttctagaagagagaaggtagcaaatatcaagcctgacccagatattgatgtctacatgaaggt 44214023  T

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Target: chr2; HSP #2
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 138 - 197
Target Start/End: Complemental strand, 44237061 - 44237002
Alignment:
Q  138 tagaagagaaaaagaagcaaagatcataccagacccagatattgatgtctacatgaaggt 197  Q
    ||||||||| || | |||||| ||||  || |||||||||||||||||||||||||||||    
T  44237061 tagaagagagaaggcagcaaatatcaagcctgacccagatattgatgtctacatgaaggt 44237002  T

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Target: chr2; HSP #3
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 169 - 197
Target Start/End: Complemental strand, 44226216 - 44226188
Alignment:
Q  169 gacccagatattgatgtctacatgaaggt 197  Q
    |||||||||||||||||||||||||||||    
T  44226216 gacccagatattgatgtctacatgaaggt 44226188  T

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Target: chr7 (Bit Score: 31; Significance: 0.00000003; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 139 - 197
Target Start/End: Original strand, 39334417 - 39334475
Alignment:
Q  139 agaagagaaaaagaagcaaagatcataccagacccagatattgatgtctacatgaaggt 197  Q
    |||||||||||||| ||||| ||||  || || |||||||||||||| |||||||||||    
T  39334417 agaagagaaaaagatgcaaatatcaagcctgatccagatattgatgtgtacatgaaggt 39334475  T

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Target: chr7; HSP #2
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 139 - 197
Target Start/End: Complemental strand, 39568187 - 39568129
Alignment:
Q  139 agaagagaaaaagaagcaaagatcataccagacccagatattgatgtctacatgaaggt 197  Q
    |||||||||||||| ||||| ||||  || || |||||||||||||| |||||||||||    
T  39568187 agaagagaaaaagatgcaaatatcaagcctgatccagatattgatgtgtacatgaaggt 39568129  T

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Target: chr1 (Bit Score: 29; Significance: 0.0000005; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 139 - 203
Target Start/End: Complemental strand, 2164650 - 2164586
Alignment:
Q  139 agaagagaaaaagaagcaaagatcataccagacccagatattgatgtctacatgaaggtgagaaa 203  Q
    |||||||| || ||||||||||| | |||||| || ||| |||||| ||| ||||||||||||||    
T  2164650 agaagagagaaggaagcaaagattaaaccagatcctgatgttgatgcctatatgaaggtgagaaa 2164586  T

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