View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5746_low_43 (Length: 354)
Name: NF5746_low_43
Description: NF5746
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5746_low_43 |
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Alignment Details
Target: chr3 (Bit Score: 258; Significance: 1e-143; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 258; E-Value: 1e-143
Query Start/End: Original strand, 11 - 352
Target Start/End: Complemental strand, 29122892 - 29122551
Alignment:
| Q |
11 |
gaacctgtgattgcaggctgccatttatgcgtgctgcctgccactgcaaaagaacctcgcgtgctagctgaacagaaaaccgaacttcataataaaatga |
110 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| |
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| T |
29122892 |
gaacctgtgattgcaggctgccatttatgcgtgctgcctgccactgcaaaagaacctcgcgtgctagctgaacagaaaaccgaacttcatgataaaatga |
29122793 |
T |
|
| Q |
111 |
tgatgtgacattttaaatgacgttttagagannnnnnnnnattaaaacttcatggatatcaatcattcaacatccttgtatgcatatgtcacatcattta |
210 |
Q |
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||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| |
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| T |
29122792 |
tgatgtgacattttaaatgacgttttagagatttttttttgttaaaacttcatggatatcaatcattcaacattcttgtatgcatatgtcacatcattta |
29122693 |
T |
|
| Q |
211 |
taatatgtggtatcactaatttttagttnnnnnnnttcgaaggaggaccaaaactattaaattttaaaatacggggattaattctacaaattggtgaaaa |
310 |
Q |
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||||||| || ||||||||||||||||| | ||||||||||||||||||||||||||||||||||| |||| |||||||||||||||||||||| |
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| T |
29122692 |
taatatgcggcatcactaatttttagttaaaaaaatccgaaggaggaccaaaactattaaattttaaaatacagggactaattctacaaattggtgaaaa |
29122593 |
T |
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| Q |
311 |
tagagtgatcagatgagtaactaattcttaaattttttaaaa |
352 |
Q |
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| T |
29122592 |
tagagtgatcagatcagtaactaattcttaaattttttaaaa |
29122551 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 88; Significance: 3e-42; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 88; E-Value: 3e-42
Query Start/End: Original strand, 11 - 98
Target Start/End: Original strand, 38196067 - 38196154
Alignment:
| Q |
11 |
gaacctgtgattgcaggctgccatttatgcgtgctgcctgccactgcaaaagaacctcgcgtgctagctgaacagaaaaccgaacttc |
98 |
Q |
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| T |
38196067 |
gaacctgtgattgcaggctgccatttatgcgtgctgcctgccactgcaaaagaacctcgcgtgctagctgaacagaaaaccgaacttc |
38196154 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 31; Significance: 0.00000003; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 255 - 313
Target Start/End: Complemental strand, 6216275 - 6216217
Alignment:
| Q |
255 |
ggaccaaaactattaaattttaaaatacggggattaattctacaaattggtgaaaatag |
313 |
Q |
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||||||||||||| |||||||||||| ||||| |||||| |||| |||||||||||| |
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| T |
6216275 |
ggaccaaaactatcgaattttaaaatagggggaccaattctgcaaagtggtgaaaatag |
6216217 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 30; Significance: 0.0000001; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 258 - 315
Target Start/End: Original strand, 3577779 - 3577836
Alignment:
| Q |
258 |
ccaaaactattaaattttaaaatacggggattaattctacaaattggtgaaaatagag |
315 |
Q |
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|||||||| | ||||||||||||| ||||| |||||| |||| |||||||||||||| |
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| T |
3577779 |
ccaaaactgtcaaattttaaaatagggggaccaattcttcaaaatggtgaaaatagag |
3577836 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 270 - 315
Target Start/End: Complemental strand, 42552603 - 42552558
Alignment:
| Q |
270 |
aattttaaaatacggggattaattctacaaattggtgaaaatagag |
315 |
Q |
| |
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||||||||||||| |||| ||||||||||| |||||||||||||| |
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|
| T |
42552603 |
aattttaaaatacagggaccaattctacaaaatggtgaaaatagag |
42552558 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 255 - 312
Target Start/End: Complemental strand, 15061528 - 15061471
Alignment:
| Q |
255 |
ggaccaaaactattaaattttaaaatacggggattaattctacaaattggtgaaaata |
312 |
Q |
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||||||||||| | ||||||||||||| | |||| ||||||||||| || |||||||| |
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| T |
15061528 |
ggaccaaaactgtcaaattttaaaataggaggatcaattctacaaaatgatgaaaata |
15061471 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 29; Significance: 0.0000005; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 270 - 314
Target Start/End: Original strand, 6198103 - 6198147
Alignment:
| Q |
270 |
aattttaaaatacggggattaattctacaaattggtgaaaataga |
314 |
Q |
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|||||||||||| ||||| ||||||||||| ||||||||||||| |
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| T |
6198103 |
aattttaaaatagggggaccaattctacaaaatggtgaaaataga |
6198147 |
T |
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