View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5746_low_50 (Length: 329)
Name: NF5746_low_50
Description: NF5746
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5746_low_50 |
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Alignment Details
Target: chr8 (Bit Score: 202; Significance: 1e-110; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 202; E-Value: 1e-110
Query Start/End: Original strand, 97 - 318
Target Start/End: Complemental strand, 11088405 - 11088184
Alignment:
| Q |
97 |
caatttcaaattccgggctcctccccatcttcacctctttttccctcaactctttaccactaatccattgaaacaaatgccaactatgtctaccacaaca |
196 |
Q |
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| T |
11088405 |
caatttcaaattccgggctcctccccatcttcacctcttttttcctcgactctttaccactaatccattgaaacaaatgtcaactatgtctaccacaaca |
11088306 |
T |
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| Q |
197 |
tatcacaattggttattcctcaattccaccatcctcccttaaaaccacgtcaacagaaactataaatctctaatcctaccaccatacgccatatatatta |
296 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| |
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| T |
11088305 |
tatcacaattggttattcctcaattccaccatcctcccttaaaaccacgtcaacagaaactataaatctctaatcctaccaccatacgtcatatatatta |
11088206 |
T |
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| Q |
297 |
cgataaccacactcctcttcat |
318 |
Q |
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|||||| ||||||||||||||| |
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| T |
11088205 |
cgataatcacactcctcttcat |
11088184 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 3 - 68
Target Start/End: Complemental strand, 11088603 - 11088535
Alignment:
| Q |
3 |
ttatcgtatcatatcata---cttcgcaaagttcggggttcaaatcccaactaccacgaaaaaattatc |
68 |
Q |
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||||| |||||||||||| ||| ||||||| |||||||||||||| || ||||||||||||||||| |
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| T |
11088603 |
ttatcatatcatatcatagtactttgcaaagtctggggttcaaatcccgaccaccacgaaaaaattatc |
11088535 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 47; Significance: 8e-18; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 47; E-Value: 8e-18
Query Start/End: Original strand, 193 - 316
Target Start/End: Original strand, 24508674 - 24508797
Alignment:
| Q |
193 |
aacatatcacaattgg-ttattcctcaattccaccatcc-tcccttaaaaccacgtcaacagaaactataaatctctaatcctaccaccatacgccatat |
290 |
Q |
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|||||||||||||||| |||||||||||||||| ||||| | | ||||||| | |||||| |||||||||||| |||| |||||||||||| || | |
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| T |
24508674 |
aacatatcacaattggattattcctcaattccatcatcccttctttaaaactaattcaacataaactataaatcattaattctaccaccatacacc--ac |
24508771 |
T |
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| Q |
291 |
atattacgataaccacactcctcttc |
316 |
Q |
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||||||||||||| |||||||||||| |
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| T |
24508772 |
atattacgataactacactcctcttc |
24508797 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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