View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5746_low_53 (Length: 319)
Name: NF5746_low_53
Description: NF5746
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5746_low_53 |
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Alignment Details
Target: chr1 (Bit Score: 166; Significance: 8e-89; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 166; E-Value: 8e-89
Query Start/End: Original strand, 1 - 297
Target Start/End: Original strand, 30901405 - 30901702
Alignment:
| Q |
1 |
aaagattctttaagcacaatatatcatcaactacgttaatttgttaataaataacttactcnnnnnnngaaagatagatagctttgtaaagctgtaagaa |
100 |
Q |
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|||| |||||||| ||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| |
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| T |
30901405 |
aaagtttctttaaacacaatatatcatcaactacgttaatttgttaataaataacttactctttttttgaaagatagatagctttgtaaagctgtaagaa |
30901504 |
T |
|
| Q |
101 |
ctaagannnnnnnnn--aggaaaggaactaagatgnnnnnnnnnnattcattagtaaacaattattagttgagtctgtgactgcccttgtcgaatnnnnn |
198 |
Q |
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|||||| |||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
30901505 |
ctaagatttttttttttaggaaaggaactaagatgtttttttt--attcattagtaaacaattattagttgagtctgtgactgcccttgtcgaataaaaa |
30901602 |
T |
|
| Q |
199 |
nnn-ctgagatcaagttctactctcacacattcttctctcttgatcaataacgctccaataaaatgtgtatatatattcattggtcggaagcatcctcat |
297 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
30901603 |
aaaactgagatcaagttctactctcacacattcttctctcttgatcaataacgctccaataaaatgtgtatatatattcattggtcggaagcatcctcat |
30901702 |
T |
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