View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5746_low_54 (Length: 318)
Name: NF5746_low_54
Description: NF5746
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5746_low_54 |
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Alignment Details
Target: chr4 (Bit Score: 290; Significance: 1e-163; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 290; E-Value: 1e-163
Query Start/End: Original strand, 1 - 302
Target Start/End: Original strand, 31872255 - 31872556
Alignment:
| Q |
1 |
tcagtgtaaaacagttttgcatcgacattcaataaaattcactatgacatggaaactttttggtatcttattagatgtcgaagtaaaattgttttacact |
100 |
Q |
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| T |
31872255 |
tcagtgtaaaacagttttgcatcgacattcaataaaattcactatgacatggaaacttttaggtatcttattagatgtcgaagtgaaattgttttacact |
31872354 |
T |
|
| Q |
101 |
gacagtgtaacaaacaagtatagcaaaataggccaatgattaaagggctttaccctcatggatccaatatgcttgctagtttgtttttgtgatccaatca |
200 |
Q |
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| T |
31872355 |
gacagtgtaacaaacaagtatagcaaaataggccaatgattaaagggctttaccctcatggatccaatatgcttgctagtttgtttttgtgatccaatca |
31872454 |
T |
|
| Q |
201 |
atctgtactcgtgcataatccaatcagttttgacaccctttggtggtctacctttgtaaaataccaaagatttcttcacaccaatttgctttgatccact |
300 |
Q |
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| T |
31872455 |
atctgtactcatgcataatccaatcagttttgacaccctttggtggtctacctttgtaaaataccaaagatttcttcacaccaatttgctttgatccact |
31872554 |
T |
|
| Q |
301 |
tt |
302 |
Q |
| |
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|| |
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| T |
31872555 |
tt |
31872556 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 47; Significance: 8e-18; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 47; E-Value: 8e-18
Query Start/End: Original strand, 190 - 300
Target Start/End: Original strand, 18428563 - 18428673
Alignment:
| Q |
190 |
tgatccaatcaatctgtactcgtgcataatccaatcagttttgacaccctttggtggtctacctttgtaaaataccaaagatttcttcacaccaatttgc |
289 |
Q |
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||||||||| || || || || |||||||||||||| || |||| ||||||||||||||||| |||||||||||||||| |||||| || ||||| ||| |
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| T |
18428563 |
tgatccaattaacctatattcatgcataatccaatctgtcttgattccctttggtggtctacccttgtaaaataccaaagctttcttaactccaatatgc |
18428662 |
T |
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| Q |
290 |
tttgatccact |
300 |
Q |
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|| || ||||| |
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| T |
18428663 |
ttagacccact |
18428673 |
T |
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