View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5746_low_55 (Length: 317)
Name: NF5746_low_55
Description: NF5746
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5746_low_55 |
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Alignment Details
Target: chr4 (Bit Score: 101; Significance: 5e-50; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 101; E-Value: 5e-50
Query Start/End: Original strand, 100 - 301
Target Start/End: Complemental strand, 44038148 - 44037950
Alignment:
| Q |
100 |
tattattagttaaccctaatgtattactattataaatgaaatgaaatactataagaaatttaaattggttaattaatggcaatataannnnnnncgtcac |
199 |
Q |
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| T |
44038148 |
tattattagttaaccctaatgtatta---ttataaatgaaatgaaataccataagaaatttaaattggttaattaatggtaatataattttttttgtcac |
44038052 |
T |
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| Q |
200 |
aatcgcttaatcaatgttgaaccnnnnnnnnnnngtactaggtaatggacatgatacaaacacgtcagtgacnnnnnnncaagtatttaagacagacata |
299 |
Q |
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| T |
44038051 |
aatcgcttaatcaatgttgaaccaaaaaaaaaaagtactaggtaatggacatgatacaaacacgtcagtgacaaaaaaacaagtatttaagacagacata |
44037952 |
T |
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