View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5746_low_56 (Length: 314)
Name: NF5746_low_56
Description: NF5746
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5746_low_56 |
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Alignment Details
Target: chr4 (Bit Score: 269; Significance: 1e-150; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 269; E-Value: 1e-150
Query Start/End: Original strand, 16 - 298
Target Start/End: Complemental strand, 25420419 - 25420140
Alignment:
| Q |
16 |
attaaataagaatttattcacaccaaactttaagaatgttaatctttggtgcaacaaaacaaccaaacctcaacaccctgttttcctctatggtttaacc |
115 |
Q |
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| T |
25420419 |
attaaataagaatttattcacaccaaactttaagaatgttaatctttggtgcaacaaaacaaccaaacctcaacaccctgttttcctctatggtttaacc |
25420320 |
T |
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| Q |
116 |
gcttagttaagagtaccaaagcaaaatcaaaacaaaactaaacaaacattttgtctataaaatccttttgtacaaagccatttcctcttcactccaacat |
215 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| |
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| T |
25420319 |
gcttagttaagagtaccaaagcaaaatcaaaacaaaactaaacaaacattttgtctataaaatccttttgtacaaagccatttcc---tcactccaacat |
25420223 |
T |
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| Q |
216 |
tttcatatcctttactcaatatgagaaattccaaagttcgacccatcaaattatccaacaattcttatgcaagttcttctatt |
298 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
25420222 |
tttcatatcctttactcaatatgagaaattccaaagttcgacccatcaaattatccaacaattcttatgcaagttcttctatt |
25420140 |
T |
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