View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5746_low_58 (Length: 304)
Name: NF5746_low_58
Description: NF5746
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5746_low_58 |
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Alignment Details
Target: chr8 (Bit Score: 257; Significance: 1e-143; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 257; E-Value: 1e-143
Query Start/End: Original strand, 11 - 291
Target Start/End: Original strand, 1538282 - 1538562
Alignment:
| Q |
11 |
gcaagcctctgtatgtcattggcagagagatgctcaggttgagttggtggttcttcttcatcagccatggaggattggatgattcaatgaaggaatgaag |
110 |
Q |
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| T |
1538282 |
gcaagcctctgtctatcattgacagagggatgctcaggttgtgttggtggtgcttcttcatcagccatggaggattggatgattcaatgaaggaatgaag |
1538381 |
T |
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| Q |
111 |
aagagaaaaatttgagaaaaacagagcacggcaatgaaaagtttcgttgttatttaaagtggttgggaaaatgaaatgaaataaccctaagattaatcta |
210 |
Q |
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| T |
1538382 |
aagagaaaaatttgagaaaaacagagcacggcaatgaaaagtttcgttgttatttaaagtggttgggaaaatgaaatgaaataaccctaagattaatcta |
1538481 |
T |
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| Q |
211 |
aagggtgtaattgaaacaaagaaaatcttcaattttgtctctatttggtcaattcaattgatgagaataatgatgaatttg |
291 |
Q |
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| T |
1538482 |
aagggtgtaattgaaacaaagaaaatcttcaattttgtctctatttggtcaattcaattgatgagaataatgatgaatttg |
1538562 |
T |
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Target: chr6 (Bit Score: 141; Significance: 6e-74; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 141; E-Value: 6e-74
Query Start/End: Original strand, 11 - 289
Target Start/End: Complemental strand, 10164325 - 10164026
Alignment:
| Q |
11 |
gcaagcctctgtatgtcattggcagagagatgctcaggttgagttggtggttcttcttcatcagccatggaggattggatgattcaatgaaggaatgaag |
110 |
Q |
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||||||||| || | |||||| ||||| ||||||| ||||| | ||||||| ||||||||||| ||||||||||||||||||||||||||||||| |||| |
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| T |
10164325 |
gcaagcctccgtgtatcattgacagagtgatgctcgggttgtggtggtggtgcttcttcatcatccatggaggattggatgattcaatgaaggaaggaag |
10164226 |
T |
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| Q |
111 |
aagagaaaaat--ttgagaaaaa-----------cagagca--cggcaatgaaaagtttcgttgttatttaaagtggttgggaaaatgaaatgaaat--- |
192 |
Q |
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||||||||||| |||||||||| ||||||| | |||||||| |||| |||||||||||| ||| |||||||||||||||||||| |
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| T |
10164225 |
aagagaaaaatgtttgagaaaaatgtgagaaaagcagagcatacaacaatgaaacgttttgttgttatttaatgtgtttgggaaaatgaaatgaaatcaa |
10164126 |
T |
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| Q |
193 |
---aaccctaagattaatctaaagggtgtaattgaaacaaagaaaatcttcaattttgtctctatttggtcaattcaattgatgagaataatgatgaatt |
289 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| ||||| |
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| T |
10164125 |
cccaaccctaagattaatctaaagggtgtaattgaaacaaagaaaatcttcaattttgtctctattcggtcaattcaattgatgagaataatgaagaatt |
10164026 |
T |
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