View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5746_low_6 (Length: 613)
Name: NF5746_low_6
Description: NF5746
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5746_low_6 |
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| [»] scaffold0095 (1 HSPs) |
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Alignment Details
Target: chr3 (Bit Score: 511; Significance: 0; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 511; E-Value: 0
Query Start/End: Original strand, 18 - 601
Target Start/End: Original strand, 44290293 - 44290878
Alignment:
| Q |
18 |
ataacattatatagaatgggttatggatggtctgaagtagtgttgctgtattagacttagctttaagatagtgtttttgttatacttgcacctatatctt |
117 |
Q |
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| T |
44290293 |
ataacattatatagaatgggttatggatggtctgaagtagtgttgctgtattagacttagctttaagatagtgtttttgttatacttgcacctatatctt |
44290392 |
T |
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| Q |
118 |
ggatatctgtaaaaatgttggttcattga-tctagattgagttagcaatttgcctttattcatactcaagatgaactgaagtttgattttgggggcagaa |
216 |
Q |
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|||||||||||||||||| ||||||| | |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
44290393 |
ggatatctgtaaaaatgtcagttcattcaatctagattgagttagcaatttgcctttattcatactcaagatgaactgaagtttgattttgggggcagaa |
44290492 |
T |
|
| Q |
217 |
agagactggataatttattagattgtacgaaaacttattacgcagatcgagttgctattcgggtcatataacgtttcaagttgttttcatgagccattca |
316 |
Q |
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|||||||||||||||||||||||||||||||||| ||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
44290493 |
-gagactggataatttattagattgtacgaaaactcattacgcagattgagttgctattcgggtcatataacgtttcaagttgttttcatgagccattca |
44290591 |
T |
|
| Q |
317 |
atatctgatccattattgttcacattgaaaatagtgttatgaaacat--tatgattatgacaatattcttaaattttcaagtagatcttattttgannnn |
414 |
Q |
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||||||||||||||||||||||||| ||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
44290592 |
atatctgatccattattgttcacatcgaaaatagtgttatgaaacatattatgattatgacaatattcttaaattttcaagtagatcttattttgatttt |
44290691 |
T |
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| Q |
415 |
nnncaggggtgactttggacggctgggtcatggtaattctagtgatttgttcattcctcagcctattagagcattacaaggattaaggataaagcaaatt |
514 |
Q |
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| T |
44290692 |
tttcaggggtgactttggacggctgggtcatggtaattctagtgatttgttcattcctcagcctattagagcattacaaggattaaggataaagcaaatt |
44290791 |
T |
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| Q |
515 |
gcttgcggtgatagccactgtttggcagttaccatggaaggcgaggttcagaggtttgtagttcttgaccgaatttttatctgtctc |
601 |
Q |
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| T |
44290792 |
gcttgcggtgatagccactgtttggcagttaccatggaaggcgaagttcagaggtttgtagttcttgaccgaatttttatctgtctc |
44290878 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0095 (Bit Score: 48; Significance: 4e-18; HSPs: 1)
Name: scaffold0095
Description:
Target: scaffold0095; HSP #1
Raw Score: 48; E-Value: 4e-18
Query Start/End: Original strand, 418 - 553
Target Start/End: Complemental strand, 19785 - 19650
Alignment:
| Q |
418 |
caggggtgactttggacggctgggtcatggtaattctagtgatttgttcattcctcagcctattagagcattacaaggattaaggataaagcaaattgct |
517 |
Q |
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| T |
19785 |
caggggtgattttggaagattaggtcatggtgatcctagtgacttattcattcctcatcccattagagcattacagggtctaaggataaagcaaatttcc |
19686 |
T |
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| Q |
518 |
tgcggtgatagccactgtttggcagttaccatggaa |
553 |
Q |
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| T |
19685 |
tgtggggactgtcattgtttggcagttaccatggaa |
19650 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 48; Significance: 4e-18; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 48; E-Value: 4e-18
Query Start/End: Original strand, 418 - 553
Target Start/End: Original strand, 39411996 - 39412131
Alignment:
| Q |
418 |
caggggtgactttggacggctgggtcatggtaattctagtgatttgttcattcctcagcctattagagcattacaaggattaaggataaagcaaattgct |
517 |
Q |
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| T |
39411996 |
caggggtgattttggaagattaggtcatggtgatcctagtgacttattcattcctcatcccattagagcattacagggtctaaggataaagcaaatttcc |
39412095 |
T |
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| Q |
518 |
tgcggtgatagccactgtttggcagttaccatggaa |
553 |
Q |
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| T |
39412096 |
tgtggggactgtcattgtttggcagttaccatggaa |
39412131 |
T |
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