View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF5746_low_61 (Length: 298)
Name: NF5746_low_61
Description: NF5746
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5746_low_61 |
 | |
|
Alignment Details
Target: chr7 (Bit Score: 165; Significance: 3e-88; HSPs: 3)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 165; E-Value: 3e-88
Query Start/End: Original strand, 17 - 281
Target Start/End: Complemental strand, 35633003 - 35632739
Alignment:
| Q |
17 |
atttattaggttagtagaactattggtgatgcatatttgaaaatgcctgaatttacgctgcacgaatcgtttccaatttttaaaaaagttcctgaatctt |
116 |
Q |
| |
|
|||||| |||| ||||||||||||||||||||||||||||||| ||||||||||| ||| ||||| |||||||| | ||||||||||||||| || ||| |
|
|
| T |
35633003 |
atttatcaggtcagtagaactattggtgatgcatatttgaaaaggcctgaatttatgcttcacgagtcgtttcccaaatttaaaaaagttcctaaacctt |
35632904 |
T |
|
| Q |
117 |
ctaatagaggtgtgctatcagtagaaccagagatgtttactaaagttttaacagagagtaataagtttcatatatttgcctctgttggactttggaagtt |
216 |
Q |
| |
|
|| || ||||||| ||||| |||||||||||||||||||| |||||||||||||| | ||||||||| ||||||||| ||||||||||||||| |||| |
|
|
| T |
35632903 |
gtacaagtggtgtgccatcagcagaaccagagatgtttactagagttttaacagagaatgataagtttcttatatttgcgtctgttggactttgggagtt |
35632804 |
T |
|
| Q |
217 |
cttgtcaaatgagctagcagttgaaattgttcaaaagaatccaagaaatgtatgtatatatccat |
281 |
Q |
| |
|
|||||||||||||| ||||| |||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
35632803 |
cttgtcaaatgagcaagcagctgaaattgttcaaaagaatccaagaaatgtatgtatatatccat |
35632739 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 129; E-Value: 9e-67
Query Start/End: Original strand, 17 - 277
Target Start/End: Complemental strand, 35629849 - 35629589
Alignment:
| Q |
17 |
atttattaggttagtagaactattggtgatgcatatttgaaaatgcctgaatttacgctgcacgaatcgtttccaatttttaaaaaagttcctgaatctt |
116 |
Q |
| |
|
||||||||||||||||||| |||||||||| ||||| |||||| || ||||||||||||| |||||||||||| | || ||||||||||||||| | | |
|
|
| T |
35629849 |
atttattaggttagtagaagtattggtgatacatatctgaaaaggcttgaatttacgctgtgcgaatcgtttcccaaattcaaaaaagttcctgaaccat |
35629750 |
T |
|
| Q |
117 |
ctaatagaggtgtgctatcagtagaaccagagatgtttactaaagttttaacagagagtaataagtttcatatatttgcctctgttggactttggaagtt |
216 |
Q |
| |
|
|| |||||||||| |||||| ||||||||||||| ||||| |||||||||| | ||| | ||||||| ||||||||| |||| |||||||||| | || |
|
|
| T |
35629749 |
ttactagaggtgtggtatcagcagaaccagagatgcgtactagagttttaacatatagtgacaagtttcttatatttgcttctgatggactttgggattt |
35629650 |
T |
|
| Q |
217 |
cttgtcaaatgagctagcagttgaaattgttcaaaagaatccaagaaatgtatgtatatat |
277 |
Q |
| |
|
|||||||||||| | ||||||||||||||||||||| ||||||||||||||| |||||||| |
|
|
| T |
35629649 |
cttgtcaaatgaacaagcagttgaaattgttcaaaacaatccaagaaatgtaagtatatat |
35629589 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 83; E-Value: 2e-39
Query Start/End: Original strand, 20 - 278
Target Start/End: Complemental strand, 35636262 - 35636004
Alignment:
| Q |
20 |
tattaggttagtagaactattggtgatgcatatttgaaaatgcctgaatttacgctgcacgaatcgtttccaatttttaaaaaagttcctgaatcttcta |
119 |
Q |
| |
|
|||||||||||||||| |||||||||| |||||||||| | ||||||||||| || |||||||||| || | ||| || |||| |||||| | | || |
|
|
| T |
35636262 |
tattaggttagtagaagtattggtgatacatatttgaagaggcctgaatttagtttggacgaatcgttccccaagtttgaagaagtgcctgaaccattta |
35636163 |
T |
|
| Q |
120 |
atagaggtgtgctatcagtagaaccagagatgtttactaaagttttaacagagagtaataagtttcatatatttgcctctgttggactttggaagttctt |
219 |
Q |
| |
|
|||||| ||| |||||| ||| || |||||| | ||| || ||||||||||| ||||||||| |||||||| |||| |||||||||| | ||||| |
|
|
| T |
35636162 |
ttagaggcgtgttatcagcagagccggagatgcgttctagagatttaacagagaacgataagtttctgatatttgcttctgatggactttgggatttctt |
35636063 |
T |
|
| Q |
220 |
gtcaaatgagctagcagttgaaattgttcaaaagaatccaagaaatgtatgtatatatc |
278 |
Q |
| |
|
||||||||| | ||||||||||||||||||||| ||| |||||||| ||||| |||||| |
|
|
| T |
35636062 |
gtcaaatgaacaagcagttgaaattgttcaaaacaattcaagaaatatatgtgtatatc |
35636004 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 121; Significance: 5e-62; HSPs: 5)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 121; E-Value: 5e-62
Query Start/End: Original strand, 162 - 290
Target Start/End: Original strand, 10338441 - 10338569
Alignment:
| Q |
162 |
ttttaacagagagtaataagtttcatatatttgcctctgttggactttggaagttcttgtcaaatgagctagcagttgaaattgttcaaaagaatccaag |
261 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
10338441 |
ttttaacagagagtaataagtttcatatatttgcctctgttggactttgggagttcttgtcaaatgagctagcagttgaaattgttcaaaagaatccaag |
10338540 |
T |
|
| Q |
262 |
aaatgtatgtatatatccattaacattga |
290 |
Q |
| |
|
||||||||||||||||||||||| ||||| |
|
|
| T |
10338541 |
aaatgtatgtatatatccattaatattga |
10338569 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 86; E-Value: 4e-41
Query Start/End: Original strand, 21 - 278
Target Start/End: Original strand, 10299000 - 10299257
Alignment:
| Q |
21 |
attaggttagtagaactattggtgatgcatatttgaaaatgcctgaatttacgctgcacgaatcgtttccaatttttaaaaaagttcctgaatcttctaa |
120 |
Q |
| |
|
||||||| |||||| ||||||||||||||||| |||| | | |||||||||| ||| |||||| || || | || ||| |||||| ||| | | || |
|
|
| T |
10299000 |
attaggtaagtagagctattggtgatgcatatctgaagaggtctgaatttactttgcgcgaatcattccccaaattggaaatagttccggaaccctttac |
10299099 |
T |
|
| Q |
121 |
tagaggtgtgctatcagtagaaccagagatgtttactaaagttttaacagagagtaataagtttcatatatttgcctctgttggactttggaagttcttg |
220 |
Q |
| |
|
|||||||||||||||| ||||||||||||| ||||| |||||||||||| | | |||||||| ||||||||| |||| |||||||||| | |||||| |
|
|
| T |
10299100 |
aagaggtgtgctatcagcagaaccagagatgcatactagagttttaacagataatgataagtttattatatttgcttctgatggactttgggatttcttg |
10299199 |
T |
|
| Q |
221 |
tcaaatgagctagcagttgaaattgttcaaaagaatccaagaaatgtatgtatatatc |
278 |
Q |
| |
|
|||||| | ||| | ||||||||||||||||||||| ||||||||||||||||||| |
|
|
| T |
10299200 |
tcaaataaaaaagctgctgaaattgttcaaaagaatcctagaaatgtatgtatatatc |
10299257 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 82; E-Value: 1e-38
Query Start/End: Original strand, 21 - 278
Target Start/End: Original strand, 10319432 - 10319689
Alignment:
| Q |
21 |
attaggttagtagaactattggtgatgcatatttgaaaatgcctgaatttacgctgcacgaatcgtttccaatttttaaaaaagttcctgaatcttctaa |
120 |
Q |
| |
|
||||||| |||||| ||||||||||||||||| |||| | | |||||||||| ||| |||||| || || | || ||| |||||| ||| | | || |
|
|
| T |
10319432 |
attaggtaagtagagctattggtgatgcatatctgaagaggtctgaatttactttgcgcgaatcattccccaaattggaaatagttccggaaccctttac |
10319531 |
T |
|
| Q |
121 |
tagaggtgtgctatcagtagaaccagagatgtttactaaagttttaacagagagtaataagtttcatatatttgcctctgttggactttggaagttcttg |
220 |
Q |
| |
|
|||||||||||||||| ||||||||||||| ||||| |||||||||||| | | || ||||| ||||||||| |||| |||||||||| | |||||| |
|
|
| T |
10319532 |
aagaggtgtgctatcagcagaaccagagatgcatactagagttttaacagataatgatcagtttattatatttgcttctgatggactttgggatttcttg |
10319631 |
T |
|
| Q |
221 |
tcaaatgagctagcagttgaaattgttcaaaagaatccaagaaatgtatgtatatatc |
278 |
Q |
| |
|
|||||| | ||| | ||||||||||||||||||||| ||||||||||||||||||| |
|
|
| T |
10319632 |
tcaaataaaaaagctgctgaaattgttcaaaagaatcctagaaatgtatgtatatatc |
10319689 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 81; E-Value: 4e-38
Query Start/End: Original strand, 22 - 278
Target Start/End: Original strand, 10336549 - 10336805
Alignment:
| Q |
22 |
ttaggttagtagaactattggtgatgcatatttgaaaatgcctgaatttacgctgcacgaatcgtttccaatttttaaaaaagttcctgaatcttctaat |
121 |
Q |
| |
|
||||||||||||| ||||||||||||||||| |||| | | |||||||||| ||| |||||| || || | || ||| |||||| ||| | | || |
|
|
| T |
10336549 |
ttaggttagtagagctattggtgatgcatatctgaagaggtctgaatttactttgcgcgaatcattccccaaattggaaatagttccggaaccctttaca |
10336648 |
T |
|
| Q |
122 |
agaggtgtgctatcagtagaaccagagatgtttactaaagttttaacagagagtaataagtttcatatatttgcctctgttggactttggaagttcttgt |
221 |
Q |
| |
|
|||||||||||||||| ||||||||||||| ||||| |||||||||||| | | || ||||| ||||||||| |||| |||||||||| | ||||||| |
|
|
| T |
10336649 |
agaggtgtgctatcagcagaaccagagatgcatactagagttttaacagataatgatcagtttattatatttgcttctgatggactttgggatttcttgt |
10336748 |
T |
|
| Q |
222 |
caaatgagctagcagttgaaattgttcaaaagaatccaagaaatgtatgtatatatc |
278 |
Q |
| |
|
||||| | ||| | ||||||||||| ||||||||| ||||||||||||||||||| |
|
|
| T |
10336749 |
caaataaaaaagctgctgaaattgttcgaaagaatcctagaaatgtatgtatatatc |
10336805 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #5
Raw Score: 79; E-Value: 6e-37
Query Start/End: Original strand, 17 - 99
Target Start/End: Original strand, 10338364 - 10338446
Alignment:
| Q |
17 |
atttattaggttagtagaactattggtgatgcatatttgaaaatgcctgaatttacgctgcacgaatcgtttccaatttttaa |
99 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| |
|
|
| T |
10338364 |
atttattaggttagtagaactattggtgatgcatatttgaaaatgcctgaatttacgctgcacgaatcgtttccaacttttaa |
10338446 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University