View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5746_low_64 (Length: 290)
Name: NF5746_low_64
Description: NF5746
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5746_low_64 |
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Alignment Details
Target: chr5 (Bit Score: 149; Significance: 1e-78; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 149; E-Value: 1e-78
Query Start/End: Original strand, 132 - 288
Target Start/End: Complemental strand, 19789527 - 19789371
Alignment:
| Q |
132 |
gcaataacttctctgttttcctagataactgtatcaattgcagcagcaaattgatttcattagaaataagaaactctcaattgcagcctttgctgtgatt |
231 |
Q |
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| T |
19789527 |
gcaataacttctctgttttcctagataactgtatcaattgcagcagcaaattgatttcattagaaataagaaactctcaattgcagcctttgctgtgatt |
19789428 |
T |
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| Q |
232 |
ctttagttacctgggttatggaatcgtacttgttaccgagtgctcaatattgagtca |
288 |
Q |
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| T |
19789427 |
ctttagttacctgggttatggaatcgtacttgttatcgagtgcttaatattgagtca |
19789371 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 122; E-Value: 1e-62
Query Start/End: Original strand, 14 - 135
Target Start/End: Complemental strand, 19789810 - 19789689
Alignment:
| Q |
14 |
caaaggatattgaattctgtcgaaatcgtagtcctgacacaacaaaattagaccttgagacacccaccatcagcagtttttcagccaagtcattgtgtat |
113 |
Q |
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| T |
19789810 |
caaaggatattgaattctgtcgaaatcgtagtcctgacacaacaaaattagaccttgagacacccaccatcagcagtttttcagccaagtcattgtgtat |
19789711 |
T |
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| Q |
114 |
ttttcatgttctcaattggcaa |
135 |
Q |
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| T |
19789710 |
ttttcatgttctcaattggcaa |
19789689 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 137; Significance: 1e-71; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 137; E-Value: 1e-71
Query Start/End: Original strand, 132 - 288
Target Start/End: Original strand, 39115521 - 39115677
Alignment:
| Q |
132 |
gcaataacttctctgttttcctagataactgtatcaattgcagcagcaaattgatttcattagaaataagaaactctcaattgcagcctttgctgtgatt |
231 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||| | |||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
39115521 |
gcaataacttctctgttttcctagataactgtatcaattgcagcagctacttgatttcattagaaataagaaactctcaattgcagcctttgctgtgatt |
39115620 |
T |
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| Q |
232 |
ctttagttacctgggttatggaatcgtacttgttaccgagtgctcaatattgagtca |
288 |
Q |
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|||||||||| |||||||||||||||||||||||| |||||||| |||||||||||| |
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| T |
39115621 |
ctttagttacttgggttatggaatcgtacttgttatcgagtgcttaatattgagtca |
39115677 |
T |
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