View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5746_low_65 (Length: 289)
Name: NF5746_low_65
Description: NF5746
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5746_low_65 |
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Alignment Details
Target: chr7 (Bit Score: 132; Significance: 1e-68; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 132; E-Value: 1e-68
Query Start/End: Original strand, 114 - 270
Target Start/End: Complemental strand, 46382689 - 46382533
Alignment:
| Q |
114 |
tcggtggttccatttgaattgaacttttcccttnnnnnnntcagatttgattaagcgtggtgtatattaaaaatgattcggttattaccaacacataatt |
213 |
Q |
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| T |
46382689 |
tcggtggttccatttgaattgaacgtttcccttaaaaaaatcagatttgattaagcgtggtgtatattaaaaatgattcggttattaccaacacataatt |
46382590 |
T |
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| Q |
214 |
acattaatacaatgtaaaataacatattacaaaatgaataacgtcaatagatataac |
270 |
Q |
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| T |
46382589 |
acattaatacaatgtaaaataacatattacaaaatgaataacgtcaatagatataac |
46382533 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 64; E-Value: 5e-28
Query Start/End: Original strand, 1 - 64
Target Start/End: Complemental strand, 46382751 - 46382688
Alignment:
| Q |
1 |
gttaaagggttttgatgatggaatttagtggctgaagaaaataaaccttcaatactgcagcatc |
64 |
Q |
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| T |
46382751 |
gttaaagggttttgatgatggaatttagtggctgaagaaaataaaccttcaatactgcagcatc |
46382688 |
T |
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