View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF5746_low_66 (Length: 286)

Name: NF5746_low_66
Description: NF5746
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF5746_low_66
NF5746_low_66
[»] chr3 (4 HSPs)
chr3 (201-264)||(32513176-32513239)
chr3 (10-62)||(32513378-32513430)
chr3 (206-264)||(32514111-32514169)
chr3 (10-62)||(32513915-32513967)
[»] chr4 (1 HSPs)
chr4 (10-62)||(43851149-43851201)


Alignment Details
Target: chr3 (Bit Score: 60; Significance: 1e-25; HSPs: 4)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 201 - 264
Target Start/End: Complemental strand, 32513239 - 32513176
Alignment:
Q  201 gaacttagtaggattgtgccaactgagatggagctatcctaaaggagatattaactaataagcc 264  Q
    |||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||    
T  32513239 gaacttagtaggattgtgccaactgagatggagctatcctaaaggatatattaactaataagcc 32513176  T

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Target: chr3; HSP #2
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 10 - 62
Target Start/End: Complemental strand, 32513430 - 32513378
Alignment:
Q  10 aagaatatgtggattgtgccgaggcgagggtcattatcgcaaaaattgtccta 62  Q
    ||||| |||||||||||||||||||||||||||||||||||||||||||||||    
T  32513430 aagaaaatgtggattgtgccgaggcgagggtcattatcgcaaaaattgtccta 32513378  T

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Target: chr3; HSP #3
Raw Score: 47; E-Value: 7e-18
Query Start/End: Original strand, 206 - 264
Target Start/End: Original strand, 32514111 - 32514169
Alignment:
Q  206 tagtaggattgtgccaactgagatggagctatcctaaaggagatattaactaataagcc 264  Q
    ||||||||| ||||||| ||||||||||||||||||||||||||||||| |||||||||    
T  32514111 tagtaggatggtgccaaatgagatggagctatcctaaaggagatattaattaataagcc 32514169  T

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Target: chr3; HSP #4
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 10 - 62
Target Start/End: Original strand, 32513915 - 32513967
Alignment:
Q  10 aagaatatgtggattgtgccgaggcgagggtcattatcgcaaaaattgtccta 62  Q
    ||||| |||||||||| ||||||||||||||||||||| |||| |||| ||||    
T  32513915 aagaaaatgtggattgagccgaggcgagggtcattatcacaaatattgcccta 32513967  T

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Target: chr4 (Bit Score: 29; Significance: 0.0000004; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 10 - 62
Target Start/End: Complemental strand, 43851201 - 43851149
Alignment:
Q  10 aagaatatgtggattgtgccgaggcgagggtcattatcgcaaaaattgtccta 62  Q
    ||||| ||||||| |||| ||| | ||||||||||||||||||||||| ||||    
T  43851201 aagaaaatgtggagtgtgtcgaagggagggtcattatcgcaaaaattgcccta 43851149  T

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