View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5746_low_7 (Length: 612)
Name: NF5746_low_7
Description: NF5746
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5746_low_7 |
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Alignment Details
Target: chr5 (Bit Score: 550; Significance: 0; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 550; E-Value: 0
Query Start/End: Original strand, 1 - 600
Target Start/End: Original strand, 19288173 - 19288775
Alignment:
| Q |
1 |
ctattcatctattattatttttctctctacttatcaaaattttaattcttcctcccc-cacttatatttcagaaggtattgtcaatcaatctctcgtcgc |
99 |
Q |
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| T |
19288173 |
ctattcatctattattatttttcactctgct-atcaaaattttaattcttcctccccccacttatatttcagaaggtattgtcaatcaatctctcgtcgc |
19288271 |
T |
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| Q |
100 |
taatcatacttattttcctatttctgccgatgatttaagtatgttaggaaaatagttctttataaaggaagtgaaatgtgccttgttctctatgggaaat |
199 |
Q |
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| T |
19288272 |
taatcatacttattttcctatttctgccgatgatttaagtatgttaggaaaatagttctttataaaggaagtgaaatgtgccttgttctctatgggaaat |
19288371 |
T |
|
| Q |
200 |
ttcaaagctccgggaatggatggttttcatcccattttcttcaagaaaaattgtgatacttttggctcgtccattttttattttacaaacaaggtatttt |
299 |
Q |
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| T |
19288372 |
ttcaaagctccgggaatggatggttttcatcccattttcttcaagaaaaattgggatacttttggctcgtccattttttattttacaaacaaggtatttt |
19288471 |
T |
|
| Q |
300 |
ttaacctagagttaattacaaatgttaatagcacccaactaacctttattcccaaaggtattgaaccttctaaagcctctaacttctaacccatatctct |
399 |
Q |
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| T |
19288472 |
ttaacctagagttaattacaaatgttaatagcacccaactaacttttattcccaaaggtattgaaccttctaaagcctctaacttctaacccatatctct |
19288571 |
T |
|
| Q |
400 |
ttgtaacgtgattgataagattg---tgactatattaatagctaacaagcttatggaagtaatgcctaaaattattttgcccaatcaaaatagcttcata |
496 |
Q |
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| T |
19288572 |
ttgtaacgtgattgataagattgtgatgactatattaatagctaacaagcttatggaagtaatgcctaaaattattttgcccaatcaaaatagcttcata |
19288671 |
T |
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| Q |
497 |
tcaaggaggagtacttttgacaatacaattaccctacaagaaattattcataccattcaaaataccaaaggaaaatattgtttatgatgattaagttaga |
596 |
Q |
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| T |
19288672 |
tcaaggaggagtacttttgacaatacaattaccctacaagaaattattcatcccattcaaaataccaaaggaaaatattgtttatgatgattaagttagt |
19288771 |
T |
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| Q |
597 |
tatt |
600 |
Q |
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|||| |
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| T |
19288772 |
tatt |
19288775 |
T |
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