View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5746_low_72 (Length: 280)
Name: NF5746_low_72
Description: NF5746
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5746_low_72 |
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| [»] chr5 (2 HSPs) |
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Alignment Details
Target: chr5 (Bit Score: 246; Significance: 1e-136; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 246; E-Value: 1e-136
Query Start/End: Original strand, 10 - 280
Target Start/End: Original strand, 10798060 - 10798330
Alignment:
| Q |
10 |
atcaaaagtcgaaattgaaattcatagccaataaaatagaagtatcaatgattagtcattgnnnnnnngttaaaacactattattgatggaaatttgtag |
109 |
Q |
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| T |
10798060 |
atcaaaagtcgaaattgaaattcatagccaataaaatagaagtatcaatgatttgtcattgaaaaaaagttaaaacactattattgatggaaatttgtag |
10798159 |
T |
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| Q |
110 |
aaaaggacaaacctcaaattgaactaaccaactgttaattcctgttccaaatcctttatctaaatggtaagctggtggactaccatccaaacaaactgca |
209 |
Q |
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| T |
10798160 |
aaaaggacaaacctcaaattgaactaaccaactgttaattcctgttccaaatcctttatctaaatggtaagctggtggactaccatccaaacaaactgca |
10798259 |
T |
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| Q |
210 |
caaaatttaaattttcaatttctcaattatcataaacatcaataaaaatagtacacatgagttgaatagca |
280 |
Q |
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| T |
10798260 |
caaaatttaaattttcaatttctcaattatcataaacatcaataaaaatagtacacatgagttgaatagca |
10798330 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 70; E-Value: 1e-31
Query Start/End: Original strand, 80 - 209
Target Start/End: Complemental strand, 18762173 - 18762044
Alignment:
| Q |
80 |
taaaacactattattgatggaaatttgtagaaaaggacaaacctcaaattgaactaaccaactgttaattcctgttccaaatcctttatctaaatggtaa |
179 |
Q |
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| T |
18762173 |
taaaacactattattgattgcaatttgtagaaaagaacaaacctccatatgaaccaaccaactgttgcttccttttccatagcccttatcaaaattgtaa |
18762074 |
T |
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| Q |
180 |
gctggtggactaccatccaaacaaactgca |
209 |
Q |
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| T |
18762073 |
gctggtggactaccatccaaacaaactgca |
18762044 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 52; Significance: 7e-21; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 52; E-Value: 7e-21
Query Start/End: Original strand, 103 - 214
Target Start/End: Complemental strand, 30385674 - 30385563
Alignment:
| Q |
103 |
tttgtagaaaaggacaaacctcaaattgaactaaccaactgttaattcctgttccaaatcctttatctaaatggtaagctggtggactaccatccaaaca |
202 |
Q |
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|||| ||||| ||||| |||||||| ||||| | ||| ||| |||||| | | ||||||| ||||| || ||||||||||||||||||||||||||||| |
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| T |
30385674 |
tttgcagaaagggacatacctcaaagtgaacaatccagttgtcaattccagcttcaaatcccttatcaaagtggtaagctggtggactaccatccaaaca |
30385575 |
T |
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| Q |
203 |
aactgcacaaaa |
214 |
Q |
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| T |
30385574 |
aactgcacaaaa |
30385563 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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